Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1625 217 2e-54 seq24 86.0 1e-14 seq1 80.6 4e-13 seq3 77.0 5e-12 >seq1625 Length=3763 Score = 217 bits (240), Expect = 2e-54 Identities = 223/283 (79%), Gaps = 15/283 (5%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 224 GTACGAGAGGAACAACTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 281 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 282 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 341 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | || ||| | |||||||||||||| | Sbjct 342 GAACGCGGTGATAC-CACCCGCACGT-ACAGATGGACAAGAATAGGCTTCGGCTTAGCGT 399 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGG-GGCGCTCAGCTGGCGGA 235 || ||||||| | | |||| || |||||| | || | | | | | ||| | Sbjct 400 CTCAGCAGGCGATTCCTCCACGG-----CCACGGAAGAGTGGTTGTGGT-ATTTCGCGTA 453 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| ||||||| || | || ||| |||||||||||||||||| Sbjct 454 TTGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 496 >seq24 Length=120003353 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 119999997 GTACAAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 120000054 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || ||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 120000055 TGGGCCAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 120000108 >seq1 Length=185492789 Score = 80.6 bits (88), Expect = 4e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || ||| |||||||||||| |||||||| Sbjct 178347229 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGNAGCTACCATCTGTGGGATTATGA 178347170 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 178347169 CTGAACGCCTCTAAGTCAGAATCC 178347146 >seq3 Length=122627250 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || | |||||||||||||| |||||||| |||||||||||||| Sbjct 38275953 TGGCTGAGGAGCCAATGGGGGGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 38275894 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 38275893 GTCAGAATCC 38275884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819174906368