Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28]
3,162 sequences; 2,553,112,587 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq1625 217 2e-54
seq24 86.0 1e-14
seq1 80.6 4e-13
seq3 77.0 5e-12
>seq1625
Length=3763
Score = 217 bits (240), Expect = 2e-54
Identities = 223/283 (79%), Gaps = 15/283 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| | || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 224 GTACGAGAGGAACAACTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 281
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 282 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 341
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | || ||| | |||||||||||||| |
Sbjct 342 GAACGCGGTGATAC-CACCCGCACGT-ACAGATGGACAAGAATAGGCTTCGGCTTAGCGT 399
Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGG-GGCGCTCAGCTGGCGGA 235
|| ||||||| | | |||| || |||||| | || | | | | | ||| |
Sbjct 400 CTCAGCAGGCGATTCCTCCACGG-----CCACGGAAGAGTGGTTGTGGT-ATTTCGCGTA 453
Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||| ||||||| || | || ||| ||||||||||||||||||
Sbjct 454 TTGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 496
>seq24
Length=120003353
Score = 86.0 bits (94), Expect = 1e-14
Identities = 89/114 (78%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| ||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 119999997 GTACAAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 120000054
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
|| ||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 120000055 TGGGCCAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 120000108
>seq1
Length=185492789
Score = 80.6 bits (88), Expect = 4e-13
Identities = 68/84 (81%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||| | || | || |||| || || || ||| |||||||||||| ||||||||
Sbjct 178347229 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGNAGCTACCATCTGTGGGATTATGA 178347170
Query 91 CTGAACGCCTCTAAGTCAGAATCC 114
||||||||||||||||||||||||
Sbjct 178347169 CTGAACGCCTCTAAGTCAGAATCC 178347146
>seq3
Length=122627250
Score = 77.0 bits (84), Expect = 5e-12
Identities = 59/70 (84%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104
|| |||| || || || | |||||||||||||| |||||||| ||||||||||||||
Sbjct 38275953 TGGCTGAGGAGCCAATGGGGGGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 38275894
Query 105 GTCAGAATCC 114
||||||||||
Sbjct 38275893 GTCAGAATCC 38275884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819174906368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |