Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1625 749 0.0 seq24 264 3e-68 >seq1625 Length=3763 Score = 749 bits (830), Expect = 0.0 Identities = 470/504 (93%), Gaps = 2/504 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3040 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 2981 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2980 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 2921 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 2920 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 2861 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2860 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 2801 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||| ||||||||| ||||||| |||||||||||| |||||| | ||||| ||||| Sbjct 2800 CAAGGCCGTGCGATTCGAGAAGTTATCATGAATCACCAAAGAGCCCAG-AGGGCATTGGT 2742 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 2741 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 2682 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct 2681 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 2622 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2621 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 2563 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 2562 AGACAAGCATATGACTACTGGCAG 2539 >seq24 Length=120003353 Score = 264 bits (292), Expect = 3e-68 Identities = 397/557 (71%), Gaps = 64/557 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || ||| |||| ||||||| ||||| | ||||||||||| Sbjct 108972290 ACTCATTCCAATTACAGGGCCTCAAGAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 108972231 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 108972230 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCTAGTT 108972171 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||||| |||||||||||| |||||||| || |||| | | |||||||| Sbjct 108972170 CTCAGGCTCCCTCTCCAGAATCGAACCCTGATTCCCCG-TATCCGTGGTCAACATGGTAG 108972112 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 | || | | || ||| || | |||||||||| ||| |||| | || || | | Sbjct 108972111 G---CTCTACGACTATCTTAAATAAATAGGGCAGACATTCAAATGGGTCGTCACCACCAC 108972055 Query 242 AAG-GCCATGCGA--TTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAA--GGGC-- 294 | | | || | || | | | ||||| || | ||||| | ||| | | ||| Sbjct 108972054 AGGAGGCAAGAGATCTGCCCAAGGTTATCTGGAGTTACCAAAGCCCCCAGCACCTGGCAC 108971995 Query 295 -----------GTTGGTTTTTTATCTAATAAATACA-------CCCCT---TCCGAAGTC 333 ||||| |||| || |||||| || | ||| ||| | Sbjct 108971994 CCCACAGCCAGGTTGG--TTTTCACTGATAAATGCACAAGCATCTCCTCTGCCCGGGATG 108971937 Query 334 GGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA- 385 ||||| | ||||||||||||||||||||| |||| ||||||| | || | Sbjct 108971936 GGGGTCAACACCCATCAGCATGTATTAGCTCTAGAATGTCCACAGTTATCCGAGCAGGAG 108971877 Query 386 AGGTAC----TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 ||| | | |||| ||| |||||||||||||||||||||| ||||||||||||| Sbjct 108971876 AGGAGCGAGTGACCAAAGGAACCATAACTGATTTAATGAGCCATT--CAGTTTCACTGTA 108971819 Query 442 -----------TAGATTGC---TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 || | || ||||||||| ||| |||||||||||||||||||||| Sbjct 108971818 CCAGCCATGCGTACTTAGCCATGTATACTTAGCCATATATGGCTTAATCTTTGAGACAAG 108971759 Query 488 CATATGACTACTGGCAG 504 |||| ||||||||||| Sbjct 108971758 CATA-CACTACTGGCAG 108971743 Score = 127 bits (140), Expect = 6e-27 Identities = 95/110 (86%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 33 CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCT 92 ||||||| |||| | ||||||||||||| | ||| ||| |||||||||||| | ||| Sbjct 119894457 CCTGTATTGTCATTTTTCGTCACTACCTCCCTGGGTCAGGAGTGGGTAATTTGCACACCT 119894398 Query 93 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC-GGAA 141 ||||||||||||||||||||||||| ||||||||| ||||||||| |||| Sbjct 119894397 GCTGCCTTCCTTGGATGTGGTAGCCTTTTCTCAGGATCCCTCTCCTGGAA 119894348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510352241152