Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28]
3,162 sequences; 2,553,112,587 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1625 749 0.0
seq24 264 3e-68
>seq1625
Length=3763
Score = 749 bits (830), Expect = 0.0
Identities = 470/504 (93%), Gaps = 2/504 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3040 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 2981
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2980 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 2921
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| |
Sbjct 2920 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 2861
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||| || || | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2860 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 2801
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||| ||||||||| ||||||| |||||||||||| |||||| | ||||| |||||
Sbjct 2800 CAAGGCCGTGCGATTCGAGAAGTTATCATGAATCACCAAAGAGCCCAG-AGGGCATTGGT 2742
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 2741 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 2682
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 2681 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 2622
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2621 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 2563
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 2562 AGACAAGCATATGACTACTGGCAG 2539
>seq24
Length=120003353
Score = 264 bits (292), Expect = 3e-68
Identities = 397/557 (71%), Gaps = 64/557 (11%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || ||| |||| ||||||| ||||| | |||||||||||
Sbjct 108972290 ACTCATTCCAATTACAGGGCCTCAAGAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 108972231
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 108972230 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCTAGTT 108972171
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|||||||||||||||| |||||||||||| |||||||| || |||| | | ||||||||
Sbjct 108972170 CTCAGGCTCCCTCTCCAGAATCGAACCCTGATTCCCCG-TATCCGTGGTCAACATGGTAG 108972112
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
| || | | || ||| || | |||||||||| ||| |||| | || || | |
Sbjct 108972111 G---CTCTACGACTATCTTAAATAAATAGGGCAGACATTCAAATGGGTCGTCACCACCAC 108972055
Query 242 AAG-GCCATGCGA--TTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAA--GGGC-- 294
| | | || | || | | | ||||| || | ||||| | ||| | | |||
Sbjct 108972054 AGGAGGCAAGAGATCTGCCCAAGGTTATCTGGAGTTACCAAAGCCCCCAGCACCTGGCAC 108971995
Query 295 -----------GTTGGTTTTTTATCTAATAAATACA-------CCCCT---TCCGAAGTC 333
||||| |||| || |||||| || | ||| ||| |
Sbjct 108971994 CCCACAGCCAGGTTGG--TTTTCACTGATAAATGCACAAGCATCTCCTCTGCCCGGGATG 108971937
Query 334 GGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA- 385
||||| | ||||||||||||||||||||| |||| ||||||| | || |
Sbjct 108971936 GGGGTCAACACCCATCAGCATGTATTAGCTCTAGAATGTCCACAGTTATCCGAGCAGGAG 108971877
Query 386 AGGTAC----TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441
||| | | |||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 108971876 AGGAGCGAGTGACCAAAGGAACCATAACTGATTTAATGAGCCATT--CAGTTTCACTGTA 108971819
Query 442 -----------TAGATTGC---TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487
|| | || ||||||||| ||| ||||||||||||||||||||||
Sbjct 108971818 CCAGCCATGCGTACTTAGCCATGTATACTTAGCCATATATGGCTTAATCTTTGAGACAAG 108971759
Query 488 CATATGACTACTGGCAG 504
|||| |||||||||||
Sbjct 108971758 CATA-CACTACTGGCAG 108971743
Score = 127 bits (140), Expect = 6e-27
Identities = 95/110 (86%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 33 CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCT 92
||||||| |||| | ||||||||||||| | ||| ||| |||||||||||| | |||
Sbjct 119894457 CCTGTATTGTCATTTTTCGTCACTACCTCCCTGGGTCAGGAGTGGGTAATTTGCACACCT 119894398
Query 93 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC-GGAA 141
||||||||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 119894397 GCTGCCTTCCTTGGATGTGGTAGCCTTTTCTCAGGATCCCTCTCCTGGAA 119894348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510352241152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |