Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2669 269 2e-67 seq22 107 2e-18 seq8 102 6e-17 seq5 86.0 5e-12 >seq2669 Length=49141 Score = 269 bits (298), Expect = 2e-67 Identities = 614/912 (67%), Gaps = 15/912 (2%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || ||| || || || || |||| | || ||||||||||| | | Sbjct 23045 ATGAGCCGTTACTGAGAGAAAACCCCCGCCGCTTCGCTGTCTTTCCCATCGAGTACCATG 22986 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| |||||||| || || || || ||||| ||||| | |||||||| || Sbjct 22985 ATATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTTTGGACTGCCGAGGAGGTGGACC 22926 Query 61145 TGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAAC 61204 | ||||| || || | |||||||| | | || ||| |||||| || | Sbjct 22925 TTTCCAAGGATATTCAGCACTGGGAGGCTCTGAAACCCGATGAGAGACATTTTATATCTC 22866 Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-T 61263 |||| |||| |||||||| || || || || ||||||||||| || |||| || | Sbjct 22865 ATGTTCTGGCTTTCTTTGCAGCGAGTGATGGCATAGTCAATGAGAACTTGGTGGAGCGAT 22806 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || || || || || ||||| | ||||| || |||||||| |||||||| ||||||||| Sbjct 22805 TTAGC-CAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATG 22747 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || || | ||||| || ||||||||| || || || || ||||| | || | | Sbjct 22746 GAAAACATACACTCTGAAATGTACAGTCCCCTTATTGACACTTACATTAAAGATCCCAAG 22687 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 ||| | ||| | |||||||| || || ||||| || |||||| ||| || || Sbjct 22686 GAAAGAGAATATCTCTTCAATGCTATTGAAACGATGCCTTGTGTGAAGAAGAAGGCTGAC 22627 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCAT 61501 |||||||| |||| | |||| |||||| | ||| ||||| | |||| | Sbjct 22626 TGGGCCTTGCGCTGGA--CTGGGGACAAAGAGGCTACGTATGGAGAACGCGTTGTGGCCT 22569 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | || || || | || || || || ||||| | || || ||| | |||| Sbjct 22568 TTGCCGCTGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGGCTCAAGA 22509 Query 61562 AAC-GTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 ||| | || || ||||| || || || || ||||||| | || | |||||||| Sbjct 22508 AACGGGGGGCTGATGCCGGGCCTTACATTTTCCAATGAGCTTATTAGTAGAGACGAGGGT 22449 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 | || ||||| ||||| || | ||||| | | ||||| | || ||||| Sbjct 22448 TTACACTGTGACTTTGCCTGCCTGATGTTCAAGC---ACCTGGTACACAAGCCAGCGGAG 22392 Query 61681 GAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGAC 61740 || | || | |||| | || | || | || || ||||| || || | || Sbjct 22391 CAGAGGGTCAGAGAGA-TAATCACCA--ACGTTAGGATAGAGCAGGAGTTCCTCCCGGAG 22335 Query 61741 GCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTT 61800 || |||||||| |||||||| |||||||| | ||| |||||||||||| ||| Sbjct 22334 GCCTTGCCCGTGAAGCTCATCGGAATGAATTGCACTTTGATGAAGCAGTATATTGAGTTT 22275 Query 61801 GTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGA-AAAACCC 61859 || |||||| | || || | || ||||| | || ||| | | | | | |||| || Sbjct 22274 GTGGCCGACAGGCTTATGCTGGAGCTGGGTTTTAACAAGAT-TTTCAGAGTAGAAAATCC 22216 Query 61860 ATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGT 61919 ||||| | |||||| | || || || || || ||||| || || || ||||| || || Sbjct 22215 GTTTGACTGCATGGAAAATATCTCACTAGAAGGAAAGACAAACTTCTTTGAGAAGCGAGT 22156 Query 61920 AGGCGACTATCA 61931 |||||| ||||| Sbjct 22155 AGGCGAGTATCA 22144 >seq22 Length=147524369 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| || ||||| || ||||| ||||| |||| ||||| || Sbjct 105164793 GGTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 105164734 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || || || | ||| ||||| | |||||| || || |||||||| || Sbjct 105164733 GTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCGGTCTCCGTCTG 105164674 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||||||||||||| | |||||| Sbjct 105164673 GGACTCAATGATGGCATACCAAAG 105164650 Score = 100 bits (110), Expect = 2e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || ||||||||||||||||||| || || || | Sbjct 105162819 CATGAAGAGATCTGGGATCCAAAGTGCAAAGAAGAGATCGCGTGCTCGCTGTTCTTCCTT 105162760 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||| ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 105162759 GCCTGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 105162701 Query 66459 AGATGGCGAACG 66470 | || || |||| Sbjct 105162700 AAATAGCAAACG 105162689 >seq8 Length=97450195 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| ||||| ||||||||||| || | ||||| || || ||||| ||||| |||| Sbjct 32806435 TGGAGCGTTTTAGTCAGGAGGTGCAGGTTCCAGAGGCTCGCTGCTTCTATGGCTTTCAGA 32806376 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| ||||| |||||||||||| | || || || || |||||||| | Sbjct 32806375 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCAGAG 32806316 Query 61376 A 61376 | Sbjct 32806315 A 32806315 >seq5 Length=114734182 Score = 86.0 bits (94), Expect = 5e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || || || || ||||| | ||||| || |||||||| |||||||| Sbjct 21261464 TGGAGCGATTTAGC-CAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAA 21261522 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||||||||||| || | ||||| || ||||||||| | || || || || ||||| Sbjct 21261523 ATTGCCATGGAAAACATACACTCTGAAATGTACAGTCTCCTTATTGACACTTACAT 21261578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397552678971680