Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq34 168 1e-39 seq9 147 3e-33 seq25 113 7e-23 seq1 84.2 3e-14 >seq34 Length=94987271 Score = 168 bits (186), Expect = 1e-39 Identities = 181/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||| | ||| |||||| |||||| | Sbjct 39848055 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGGCCCGCACTTACTGGGAATT-C 39847998 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 39847997 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 39847938 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 39847937 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 39847878 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 39847877 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 39847825 >seq9 Length=156508116 Score = 147 bits (162), Expect = 3e-33 Identities = 172/225 (76%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| ||||| || |||||| ||||| | Sbjct 78774099 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTGCACTTACTGAGAATT-C 78774042 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||||||| | || ||||||||| | ||||||||||||| ||||| | || Sbjct 78774041 CTCGTTGGTGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAATGGGTT 78773982 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGT--TGAATACATCAGTGTAGCGCGCGTG 177 ||||| |||| ||| || ||| ||| | | | ||| |||||||| | |||||| Sbjct 78773981 ACCCGCGCCTGCCGGGCATAGTG-TAGGCACATGCTGAGCCAGTCAGTGTATCTCGCGTG 78773923 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 | |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 78773922 CAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 78773879 >seq25 Length=129401213 Score = 113 bits (124), Expect = 7e-23 Identities = 174/239 (73%), Gaps = 22/239 (9%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||||||| | | ||||| ||||| ||| |||||| |||||| | Sbjct 3754504 GTACAAAGGTCAGGGACTT--------CAAGCTT-ATGACCCGCACTTACTGGGAATT-C 3754553 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGA-T 118 ||||| | | || ||||||||| | ||||||||||||| || ||| || || | Sbjct 3754554 CTCGTCCATGGGGAATAATTGCAATCCCCAATCCCCATCACGAATGGGGTTT-AACGAGT 3754612 Query 119 TACCCGGACCTGTCGGCCAAGGT--GATAG--ACTCGTTGAATACATCAGTGTAGCGCGC 174 |||||| |||| ||| || | ||| || | ||| |||||||||||| Sbjct 3754613 TACCCG----TGTCTGCCTGTGTAGGGTAGGCACACACTGAGCCAGTCAGTGTAGCGCAT 3754668 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| || | | |||||||||||||||||||||||||||||| ||||| ||| ||||| Sbjct 3754669 GTGCAGCTCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTTGGGTGGC 3754726 >seq1 Length=195471971 Score = 84.2 bits (92), Expect = 3e-14 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||| |||| | ||| ||||||||||||||||||||||||| ||| Sbjct 56782105 TCAGTGTAGCGCGCGTGCAGCCCCGGGCATGTAAGGGCATCACAGACCTGTTATTG-CTC 56782163 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 56782164 AATCTCAGGTGGC 56782176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751998492005