Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29]
207 sequences; 2,807,715,301 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq34 168 1e-39
seq9 147 3e-33
seq25 113 7e-23
seq1 84.2 3e-14
>seq34
Length=94987271
Score = 168 bits (186), Expect = 1e-39
Identities = 181/234 (77%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||||| ||| | ||| |||||| |||||| |
Sbjct 39848055 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGGCCCGCACTTACTGGGAATT-C 39847998
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||||||||||||| ||||| | ||
Sbjct 39847997 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 39847938
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||| |||| ||| | || || ||| ||||||||||||||||||
Sbjct 39847937 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 39847878
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 39847877 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 39847825
>seq9
Length=156508116
Score = 147 bits (162), Expect = 3e-33
Identities = 172/225 (76%), Gaps = 7/225 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||| || ||||| ||||| || |||||| ||||| |
Sbjct 78774099 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTGCACTTACTGAGAATT-C 78774042
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
||||||| | || ||||||||| | ||||||||||||| ||||| | ||
Sbjct 78774041 CTCGTTGGTGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAATGGGTT 78773982
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGT--TGAATACATCAGTGTAGCGCGCGTG 177
||||| |||| ||| || ||| ||| | | | ||| |||||||| | ||||||
Sbjct 78773981 ACCCGCGCCTGCCGGGCATAGTG-TAGGCACATGCTGAGCCAGTCAGTGTATCTCGCGTG 78773923
Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
| |||| | |||||||||||||||||||||||||||||| |||||
Sbjct 78773922 CAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 78773879
>seq25
Length=129401213
Score = 113 bits (124), Expect = 7e-23
Identities = 174/239 (73%), Gaps = 22/239 (9%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||| ||||||| | | ||||| ||||| ||| |||||| |||||| |
Sbjct 3754504 GTACAAAGGTCAGGGACTT--------CAAGCTT-ATGACCCGCACTTACTGGGAATT-C 3754553
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGA-T 118
||||| | | || ||||||||| | ||||||||||||| || ||| || || |
Sbjct 3754554 CTCGTCCATGGGGAATAATTGCAATCCCCAATCCCCATCACGAATGGGGTTT-AACGAGT 3754612
Query 119 TACCCGGACCTGTCGGCCAAGGT--GATAG--ACTCGTTGAATACATCAGTGTAGCGCGC 174
|||||| |||| ||| || | ||| || | ||| ||||||||||||
Sbjct 3754613 TACCCG----TGTCTGCCTGTGTAGGGTAGGCACACACTGAGCCAGTCAGTGTAGCGCAT 3754668
Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| || | | |||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 3754669 GTGCAGCTCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTTGGGTGGC 3754726
>seq1
Length=195471971
Score = 84.2 bits (92), Expect = 3e-14
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|||||||||||||||||| |||| | ||| ||||||||||||||||||||||||| |||
Sbjct 56782105 TCAGTGTAGCGCGCGTGCAGCCCCGGGCATGTAAGGGCATCACAGACCTGTTATTG-CTC 56782163
Query 221 AAACTTCCGTGGC 233
|| || |||||
Sbjct 56782164 AATCTCAGGTGGC 56782176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751998492005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |