Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29]
207 sequences; 2,807,715,301 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq34 174 3e-41
seq22 168 1e-39
seq37 95.1 2e-17
seq36 89.7 9e-16
seq8 77.0 6e-12
>seq34
Length=94987271
Score = 174 bits (192), Expect = 3e-41
Identities = 208/278 (75%), Gaps = 6/278 (2%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||||
Sbjct 39847122 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 39847181
Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| ||| |||||||| ||||||||| ||||
Sbjct 39847182 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 39847240
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||||||||||||| | || | | |||||||| ||||| | |||||| |
Sbjct 39847241 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 39847300
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| | |||||||||||||||||| ||||| || | ||||||||
Sbjct 39847301 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 39847360
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| ||||| |||||||||||||||| ||||||||||
Sbjct 39847361 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 39847397
>seq22
Length=149736546
Score = 168 bits (186), Expect = 1e-39
Identities = 207/278 (74%), Gaps = 6/278 (2%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||||
Sbjct 3201211 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 3201270
Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| ||| |||||||| ||||||||| | ||
Sbjct 3201271 TCAAAGCAGGCCCGAGCCGCCTGGATACTGCAGCTAGGAATAATGGAATAGGACC-GTGG 3201329
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||||||||||||| | || | | |||||||| ||||| | |||||| |
Sbjct 3201330 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 3201389
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| | |||||||||||||||||| ||||| || | ||||||||
Sbjct 3201390 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGTAAGACGGACCAGAGCGAAAGCA 3201449
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| ||||| |||||||||||||||| ||||||||||
Sbjct 3201450 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 3201486
>seq37
Length=171031299
Score = 95.1 bits (104), Expect = 2e-17
Identities = 105/137 (77%), Gaps = 5/137 (4%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| | | || ||| | | | |||||||||||||||||||||| |
Sbjct 24008595 ATGCTCTTAGCTGAGTGTCCTGCGGGGCCCGAAGTGTTTACTTTGAAAAAATTAGAGTAT 24008654
Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| ||| ||||||| ||||||||| ||||
Sbjct 24008655 TCAAAGCAGGCCCAAGCCGCCTGGATACCACAGCTAAGAATAATGGAATAGGAC-CGCGG 24008713
Query 155 TTCTATTTTGTTGGTTT 171
||||||||| |||||||
Sbjct 24008714 TTCTATTTTATTGGTTT 24008730
>seq36
Length=61431566
Score = 89.7 bits (98), Expect = 9e-16
Identities = 119/162 (73%), Gaps = 5/162 (3%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| |||||| | | |||||||||||| |||||||||||
Sbjct 13054951 ATGCTCTTAGCTGAGTGTCCCGAGGAGCCCAAAGCGTTTACTTTGAAAGAATTAGAGTGT 13055010
Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
||||| |||||| ||| |||| || ||||||| ||||||||| ||
Sbjct 13055011 TCAAAACAGGCCCGAGCCGCTTAGATACTGCAGTTAAGAATAATGGAATAGGAC-CATGG 13055069
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAG 196
||||||||||||||||| || || | | |||||||| ||
Sbjct 13055070 TTCTATTTTGTTGGTTTTCAGAACTGAGGCCATGATTAAGAG 13055111
>seq8
Length=160039680
Score = 77.0 bits (84), Expect = 6e-12
Identities = 96/127 (76%), Gaps = 5/127 (4%)
Strand=Plus/Minus
Query 49 CTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG 107
||| |||| | | || ||| | | | |||||||||||| |||||| |||| |||||||||
Sbjct 11904789 CTGAGTGTCCTGCGGGGCCCGAAGCATTTACTTTGAAAGAATTAGCGTGTCCAAAGCAGG 11904730
Query 108 -CCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164
||| ||| ||||| | ||| || |||| ||||| ||| ||||||||||||
Sbjct 11904729 TCCTAGCTGCCTGAATAAAACAGCTAAGAGTAATGGAATAAGAC-CATGGTTCTATTTTG 11904671
Query 165 TTGGTTT 171
|||||||
Sbjct 11904670 TTGGTTT 11904664
Score = 77.0 bits (84), Expect = 6e-12
Identities = 127/178 (71%), Gaps = 4/178 (2%)
Strand=Plus/Plus
Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATA 201
||||||| | | |||||||||||||||||| || || || |||||| | ||||| |
Sbjct 16110915 ATAGGACTT-CAGTTCTATTTTGTTGGTTTTCAGAACTCAGGTCATGATTCAGAGGGACA 16110973
Query 202 GTCGGGGGTGTCAGTATT-CAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260
| ||||| | | |||| | | | ||| |||| |||||||||| ||||| |
Sbjct 16110974 GATGGGGGCATTATTATTGCTACACT-AGACTTGAAGTTCTTGGATTGGCACAAGACAGA 16111032
Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
| || ||||| || | ||| |||||||||||||||| |||| ||||| || ||
Sbjct 16111033 CCCTAGCAAAAGCATTGGCAAAGAATGTTTTCATTAATCA-AGAACAAAAGTCAGAGG 16111089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915198105536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |