Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq34 174 3e-41 seq22 168 1e-39 seq37 95.1 2e-17 seq36 89.7 9e-16 seq8 77.0 6e-12 >seq34 Length=94987271 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 39847122 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 39847181 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 39847182 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 39847240 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 39847241 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 39847300 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 39847301 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 39847360 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 39847361 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 39847397 >seq22 Length=149736546 Score = 168 bits (186), Expect = 1e-39 Identities = 207/278 (74%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 3201211 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 3201270 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| | || Sbjct 3201271 TCAAAGCAGGCCCGAGCCGCCTGGATACTGCAGCTAGGAATAATGGAATAGGACC-GTGG 3201329 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 3201330 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 3201389 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 3201390 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGTAAGACGGACCAGAGCGAAAGCA 3201449 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 3201450 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 3201486 >seq37 Length=171031299 Score = 95.1 bits (104), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 5/137 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| | | || ||| | | | |||||||||||||||||||||| | Sbjct 24008595 ATGCTCTTAGCTGAGTGTCCTGCGGGGCCCGAAGTGTTTACTTTGAAAAAATTAGAGTAT 24008654 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| ||||||| ||||||||| |||| Sbjct 24008655 TCAAAGCAGGCCCAAGCCGCCTGGATACCACAGCTAAGAATAATGGAATAGGAC-CGCGG 24008713 Query 155 TTCTATTTTGTTGGTTT 171 ||||||||| ||||||| Sbjct 24008714 TTCTATTTTATTGGTTT 24008730 >seq36 Length=61431566 Score = 89.7 bits (98), Expect = 9e-16 Identities = 119/162 (73%), Gaps = 5/162 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| |||||| | | |||||||||||| ||||||||||| Sbjct 13054951 ATGCTCTTAGCTGAGTGTCCCGAGGAGCCCAAAGCGTTTACTTTGAAAGAATTAGAGTGT 13055010 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||| |||||| ||| |||| || ||||||| ||||||||| || Sbjct 13055011 TCAAAACAGGCCCGAGCCGCTTAGATACTGCAGTTAAGAATAATGGAATAGGAC-CATGG 13055069 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAG 196 ||||||||||||||||| || || | | |||||||| || Sbjct 13055070 TTCTATTTTGTTGGTTTTCAGAACTGAGGCCATGATTAAGAG 13055111 >seq8 Length=160039680 Score = 77.0 bits (84), Expect = 6e-12 Identities = 96/127 (76%), Gaps = 5/127 (4%) Strand=Plus/Minus Query 49 CTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG 107 ||| |||| | | || ||| | | | |||||||||||| |||||| |||| ||||||||| Sbjct 11904789 CTGAGTGTCCTGCGGGGCCCGAAGCATTTACTTTGAAAGAATTAGCGTGTCCAAAGCAGG 11904730 Query 108 -CCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164 ||| ||| ||||| | ||| || |||| ||||| ||| |||||||||||| Sbjct 11904729 TCCTAGCTGCCTGAATAAAACAGCTAAGAGTAATGGAATAAGAC-CATGGTTCTATTTTG 11904671 Query 165 TTGGTTT 171 ||||||| Sbjct 11904670 TTGGTTT 11904664 Score = 77.0 bits (84), Expect = 6e-12 Identities = 127/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATA 201 ||||||| | | |||||||||||||||||| || || || |||||| | ||||| | Sbjct 16110915 ATAGGACTT-CAGTTCTATTTTGTTGGTTTTCAGAACTCAGGTCATGATTCAGAGGGACA 16110973 Query 202 GTCGGGGGTGTCAGTATT-CAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260 | ||||| | | |||| | | | ||| |||| |||||||||| ||||| | Sbjct 16110974 GATGGGGGCATTATTATTGCTACACT-AGACTTGAAGTTCTTGGATTGGCACAAGACAGA 16111032 Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || ||||| || | ||| |||||||||||||||| |||| ||||| || || Sbjct 16111033 CCCTAGCAAAAGCATTGGCAAAGAATGTTTTCATTAATCA-AGAACAAAAGTCAGAGG 16111089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915198105536