Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29]
207 sequences; 2,807,715,301 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq33 145 3e-32
seq32 145 3e-32
seq30 143 1e-31
seq175 140 1e-30
seq29 140 1e-30
seq22 140 1e-30
seq8 132 2e-28
seq31 118 4e-24
seq7 118 4e-24
seq28 116 2e-23
seq16 105 3e-20
seq25 102 3e-19
seq27 89.7 2e-15
seq35 86.0 3e-14
seq1 80.6 1e-12
>seq33
Length=98207768
Score = 145 bits (160), Expect = 3e-32
Identities = 113/135 (84%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | |||| || ||| |||||||||||||||||||||||||||| || | ||||
Sbjct 57391507 GAGCACGAGCGTACGCGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGAGCGAAG 57391448
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| |
Sbjct 57391447 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 57391388
Query 669 TGGGTATAGGGGCGA 683
|||||||||||||||
Sbjct 57391387 TGGGTATAGGGGCGA 57391373
Score = 75.2 bits (82), Expect = 5e-11
Identities = 95/131 (73%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||||||||||||| | || || |||||| | | || |||||| |||
Sbjct 6322782 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCCGGTGGTAAACTCCATCGAAAGCTGAAT 6322841
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || || |||||| | ||||||| | ||| ||||| || |||| ||| || |
Sbjct 6322842 ACCAGCATGAAACCGATGGTTAACAAGTACAATGAGGGAAAGTTGGAAAGAACTATGAAG 6322901
Query 160 AGAGAGTTAAA 170
| |||| ||||
Sbjct 6322902 ATAGAGCTAAA 6322912
>seq32
Length=104043685
Score = 145 bits (160), Expect = 3e-32
Identities = 103/118 (87%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
|| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 47539995 TTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGT 47540054
Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||| || |||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 47540055 GGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 47540112
Score = 140 bits (154), Expect = 1e-30
Identities = 112/135 (83%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | |||| || ||| |||||||||||||||||||||||||||| |||| |||
Sbjct 86194888 GAGCACGAGCGTACGCGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAG 86194947
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||||| ||| | ||||||||| ||||| |
Sbjct 86194948 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACATGCAAATCGGTCGTCCGACC 86195007
Query 669 TGGGTATAGGGGCGA 683
|||||||||||||||
Sbjct 86195008 TGGGTATAGGGGCGA 86195022
Score = 78.8 bits (86), Expect = 4e-12
Identities = 85/113 (75%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
||||| |||||||||||||||||||||| |||| | |||||| ||||||||||| |
Sbjct 52175105 GGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCAACTCCAGAGAAAACTCTGGTGAA 52175164
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|| | || ||| | ||||||||| ||| | | ||| |||||||||
Sbjct 52175165 GGTCCATAGTGGTCCCAATGTGCAAATCCATCCTTCTACCTGGATATAGGGGC 52175217
>seq30
Length=120421639
Score = 143 bits (158), Expect = 1e-31
Identities = 102/117 (87%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624
||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 44870014 GTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 44869955
Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|||||| || |||||| ||| ||||||||||| ||||| | |||||||||||||
Sbjct 44869954 TGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGC 44869898
>seq175
Length=161821
Score = 140 bits (154), Expect = 1e-30
Identities = 114/136 (84%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607
||| | |||| || ||| || ||||||||||||| ||||| |||||||| |||| |||
Sbjct 78909 GAGCACGAGCGTATGCT-TTAGGACCCGAAAGATAGTGAAGTATGCCTGGGCAGGGCGAA 78967
Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667
||||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| |
Sbjct 78968 GCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGAC 79027
Query 668 TTGGGTATAGGGGCGA 683
|||||||||||||||
Sbjct 79028 CTGGGTATAGGGGCGA 79043
>seq29
Length=120129022
Score = 140 bits (154), Expect = 1e-30
Identities = 112/135 (83%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | |||| || ||| |||||||||||||| |||||||||||| |||| ||||
Sbjct 99645232 GAGCACGAGCGTATGCGTTAGGACCCGAAAGATGACGAACTATGCCTGGGCAGGGCGAAG 99645291
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| |
Sbjct 99645292 CCAGAGGAAACTCTGGTGGAGGTCCGAAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 99645351
Query 669 TGGGTATAGGGGCGA 683
|||||||||||||||
Sbjct 99645352 TGGGTATAGGGGCGA 99645366
Score = 113 bits (124), Expect = 2e-22
Identities = 95/117 (81%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624
||| ||||| |||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 54135165 GTTAGGACCTGAAAGATGGTGAACTATGACTGGGCAGGGCAAAGCCAGAGGAAACTCTGG 54135224
Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|||| | | ||| || ||| | ||||||||| | ||| || |||||||||||||
Sbjct 54135225 TGGAAGTCTGTAGCAGTCCTGACCTGCAAATCGGTGGTCCAACCTGGGTATAGGGGC 54135281
>seq22
Length=149736546
Score = 140 bits (154), Expect = 1e-30
Identities = 98/112 (88%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 145933027 CCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGT 145932968
Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| |||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 145932967 CCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 145932916
Score = 129 bits (142), Expect = 2e-27
Identities = 92/106 (87%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637
||||||||||||||||||| |||| |||||||||||||||||||||||||| || ||
Sbjct 44792930 AGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAG 44792989
Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 44792990 CGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 44793035
Score = 78.8 bits (86), Expect = 4e-12
Identities = 84/111 (76%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630
|||| | ||||| |||||| ||||||| ||| | | ||| |||||||||||||||||
Sbjct 22272527 ACCCAACAGATGCTGAACTGTGCCTGAGTAGAGCAAGACCACAGGAAACTCTGGTGGAGA 22272468
Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
| ||| |||||| | ||||| |||| || | |||||||||||||
Sbjct 22272467 TCCATAGCTGTTCTGATATACAAATTGATCATCTGACATGGGTATAGGGGC 22272417
>seq8
Length=160039680
Score = 132 bits (146), Expect = 2e-28
Identities = 109/130 (84%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 555 GAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
|||| || ||| || ||||||||||||| ||||| |||| ||| |||| |||||||||
Sbjct 37481467 GAGCGTATGCT-TTAGGACCCGAAAGATAGTGAAGTATGGCTGGGCAGGGCGAAGCCAGA 37481525
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
||||||||||||||||| | |||||| ||| ||||||||||| |||||| | |||||
Sbjct 37481526 GGAAACTCTGGTGGAGGTCTGTAGCGGTCCTGACGTGCAAATCGGTCGTCAGACCTGGGT 37481585
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 37481586 ATAGGGGCGA 37481595
Score = 100 bits (110), Expect = 1e-18
Identities = 123/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 32 CCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAA 91
||||| |||| | |||| ||||||||||||| | || |||| |||||| | | |||||
Sbjct 62159059 CCTTCCCGGAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAA 62159118
Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCA 151
|||||||| ||| |||||| |||| | ||||| | ||||| ||||||| |
Sbjct 62159119 GGCTAAATACCGGCACGAGACCAATAGTCAATAAGTACCTGAAGGGAAAGTTGAAAAGAA 62159178
Query 152 CTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||||| | |||||||| || || | ||||| ||| | ||| || ||
Sbjct 62159179 CTTTGAAGAGAGAGTTCAAGAGGGCATGAAACCGTTAAGAGGTAAACG 62159226
>seq31
Length=124902244
Score = 118 bits (130), Expect = 4e-24
Identities = 94/112 (84%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 50466036 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAA--CTGGTGGA 50466093
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680
|| || |||||| ||| ||||||||| | ||||| | ||||||| ||||
Sbjct 50466094 GGTCCGTAGCGGTCCTGACGTGCAAATAGGTCGTCCGACCTGGGTATGGGGG 50466145
>seq7
Length=182113224
Score = 118 bits (130), Expect = 4e-24
Identities = 86/100 (86%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643
||||||||||||| |||| |||||||||||||||||||||||||| || |||||| |
Sbjct 20899847 TGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCC 20899906
Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| ||||||||||| ||||| | |||||||||||||||
Sbjct 20899907 TGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 20899946
Score = 93.3 bits (102), Expect = 2e-16
Identities = 74/89 (83%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647
|||||||||| ||||||||||||||||||||||||||||||| | |||||| ||| |
Sbjct 13878759 CTATGCCTGACCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGTCCATAGCGGTCCTGAC 13878818
Query 648 GTGCAAATCGATCGTCAAATTTGGGTATA 676
|||||||| | || || | ||||||||
Sbjct 13878819 GTGCAAATAGGTCATCTGACCTGGGTATA 13878847
>seq28
Length=122082543
Score = 116 bits (128), Expect = 2e-23
Identities = 88/104 (85%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639
||||||||||||||||| |||| ||||||||||||||||||||||||| || || |
Sbjct 33755103 ATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGTG 33755044
Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 33755043 GTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 33755000
>seq16
Length=151834684
Score = 105 bits (116), Expect = 3e-20
Identities = 119/157 (76%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| ||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 146261115 GAGTCGGATTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 146261174
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| |
Sbjct 146261175 ACCGGCACGAGACCGATAGTCAACAAGTA-CCTAAGGGAAAGTTGAAAAGAACTTTG--A 146261231
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196
|||||||| || || ||||||| ||| | ||| ||
Sbjct 146261232 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAA 146261268
Score = 75.2 bits (82), Expect = 5e-11
Identities = 80/104 (77%), Gaps = 5/104 (5%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAAC----TATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619
|||| |||| |||||||||||||| ||||||| |||| ||||||||||| |||
Sbjct 143155008 TGTTAGGACGGGAAAGATGGTGAACTATGTATGCCTAGGCAGGGCGAAGCCAGAGG-AAC 143154950
Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663
|||| |||||| || || ||| ||| ||||||| | |||||
Sbjct 143154949 TCTGCTGGAGGTTCAGAGTGGTCCTGATGTGCAAACTGGTCGTC 143154906
>seq25
Length=129401213
Score = 102 bits (112), Expect = 3e-19
Identities = 73/84 (87%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659
|||| |||||||||||||||||||||||||| || |||||| ||| ||||||||||| |
Sbjct 15519776 AGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGT 15519835
Query 660 CGTCAAATTTGGGTATAGGGGCGA 683
|||| | |||||||||||||||
Sbjct 15519836 CGTCCGACCTGGGTATAGGGGCGA 15519859
>seq27
Length=130694993
Score = 89.7 bits (98), Expect = 2e-15
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639
||||||||||||||||| || |||||||||||||||||||||||||| | |||
Sbjct 105238134 ATGGTGAACTATGCCTGGGCAGATCGAAGCCAGAGGAAACTCTGGTGGAGGTCCATAGCA 105238193
Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| ||| | ||||||| | | ||| | ||||||| |||||||
Sbjct 105238194 GTCCTGACTTGCAAATTGGTGGTCCGACCTGGGTATTGGGGCGA 105238237
>seq35
Length=90702639
Score = 86.0 bits (94), Expect = 3e-14
Identities = 75/91 (82%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
|||||||| ||||||||||||||| |||||| |||| |||| |||||||||||||||
Sbjct 5146885 TTGGGACCTGAAAGATGGTGAACTCTGCCTGGGCAGGGCAAAGCTAGAGGAAACTCTGGT 5146944
Query 626 GGAGGCTCGCAG-CGGTTCTGGCGTGCAAAT 655
||||| || | | ||||||| |||||||
Sbjct 5146945 GGAGG-TCTCTGTTGGTTCTGATATGCAAAT 5146974
>seq1
Length=195471971
Score = 80.6 bits (88), Expect = 1e-12
Identities = 71/89 (80%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 122357227 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 122357168
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA 128
| ||| ||||||||||| |||||||
Sbjct 122357167 ACGGGCATGAGACCGATAGTCAACAAGTA 122357139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079995559850
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