Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq33 145 3e-32 seq32 145 3e-32 seq30 143 1e-31 seq175 140 1e-30 seq29 140 1e-30 seq22 140 1e-30 seq8 132 2e-28 seq31 118 4e-24 seq7 118 4e-24 seq28 116 2e-23 seq16 105 3e-20 seq25 102 3e-19 seq27 89.7 2e-15 seq35 86.0 3e-14 seq1 80.6 1e-12 >seq33 Length=98207768 Score = 145 bits (160), Expect = 3e-32 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||| |||||||||||||||||||||||||||| || | |||| Sbjct 57391507 GAGCACGAGCGTACGCGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGAGCGAAG 57391448 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 57391447 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 57391388 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 57391387 TGGGTATAGGGGCGA 57391373 Score = 75.2 bits (82), Expect = 5e-11 Identities = 95/131 (73%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || || |||||| | | || |||||| ||| Sbjct 6322782 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCCGGTGGTAAACTCCATCGAAAGCTGAAT 6322841 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || || |||||| | ||||||| | ||| ||||| || |||| ||| || | Sbjct 6322842 ACCAGCATGAAACCGATGGTTAACAAGTACAATGAGGGAAAGTTGGAAAGAACTATGAAG 6322901 Query 160 AGAGAGTTAAA 170 | |||| |||| Sbjct 6322902 ATAGAGCTAAA 6322912 >seq32 Length=104043685 Score = 145 bits (160), Expect = 3e-32 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 47539995 TTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGT 47540054 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 47540055 GGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 47540112 Score = 140 bits (154), Expect = 1e-30 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||| |||||||||||||||||||||||||||| |||| ||| Sbjct 86194888 GAGCACGAGCGTACGCGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAG 86194947 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| | ||||||||| ||||| | Sbjct 86194948 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACATGCAAATCGGTCGTCCGACC 86195007 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 86195008 TGGGTATAGGGGCGA 86195022 Score = 78.8 bits (86), Expect = 4e-12 Identities = 85/113 (75%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| |||||||||||||||||||||| |||| | |||||| ||||||||||| | Sbjct 52175105 GGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCAACTCCAGAGAAAACTCTGGTGAA 52175164 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || | || ||| | ||||||||| ||| | | ||| ||||||||| Sbjct 52175165 GGTCCATAGTGGTCCCAATGTGCAAATCCATCCTTCTACCTGGATATAGGGGC 52175217 >seq30 Length=120421639 Score = 143 bits (158), Expect = 1e-31 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 44870014 GTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 44869955 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||| Sbjct 44869954 TGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGC 44869898 >seq175 Length=161821 Score = 140 bits (154), Expect = 1e-30 Identities = 114/136 (84%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||| | |||| || ||| || ||||||||||||| ||||| |||||||| |||| ||| Sbjct 78909 GAGCACGAGCGTATGCT-TTAGGACCCGAAAGATAGTGAAGTATGCCTGGGCAGGGCGAA 78967 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 78968 GCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGAC 79027 Query 668 TTGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 79028 CTGGGTATAGGGGCGA 79043 >seq29 Length=120129022 Score = 140 bits (154), Expect = 1e-30 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||| |||||||||||||| |||||||||||| |||| |||| Sbjct 99645232 GAGCACGAGCGTATGCGTTAGGACCCGAAAGATGACGAACTATGCCTGGGCAGGGCGAAG 99645291 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 99645292 CCAGAGGAAACTCTGGTGGAGGTCCGAAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 99645351 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 99645352 TGGGTATAGGGGCGA 99645366 Score = 113 bits (124), Expect = 2e-22 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||||| |||||||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 54135165 GTTAGGACCTGAAAGATGGTGAACTATGACTGGGCAGGGCAAAGCCAGAGGAAACTCTGG 54135224 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| | | ||| || ||| | ||||||||| | ||| || ||||||||||||| Sbjct 54135225 TGGAAGTCTGTAGCAGTCCTGACCTGCAAATCGGTGGTCCAACCTGGGTATAGGGGC 54135281 >seq22 Length=149736546 Score = 140 bits (154), Expect = 1e-30 Identities = 98/112 (88%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 145933027 CCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGT 145932968 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 145932967 CCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 145932916 Score = 129 bits (142), Expect = 2e-27 Identities = 92/106 (87%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||||||||||||||||| |||| |||||||||||||||||||||||||| || || Sbjct 44792930 AGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAG 44792989 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 44792990 CGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 44793035 Score = 78.8 bits (86), Expect = 4e-12 Identities = 84/111 (76%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 |||| | ||||| |||||| ||||||| ||| | | ||| ||||||||||||||||| Sbjct 22272527 ACCCAACAGATGCTGAACTGTGCCTGAGTAGAGCAAGACCACAGGAAACTCTGGTGGAGA 22272468 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | ||| |||||| | ||||| |||| || | ||||||||||||| Sbjct 22272467 TCCATAGCTGTTCTGATATACAAATTGATCATCTGACATGGGTATAGGGGC 22272417 >seq8 Length=160039680 Score = 132 bits (146), Expect = 2e-28 Identities = 109/130 (84%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 555 GAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||| || ||| || ||||||||||||| ||||| |||| ||| |||| ||||||||| Sbjct 37481467 GAGCGTATGCT-TTAGGACCCGAAAGATAGTGAAGTATGGCTGGGCAGGGCGAAGCCAGA 37481525 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||| | |||||| ||| ||||||||||| |||||| | ||||| Sbjct 37481526 GGAAACTCTGGTGGAGGTCTGTAGCGGTCCTGACGTGCAAATCGGTCGTCAGACCTGGGT 37481585 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 37481586 ATAGGGGCGA 37481595 Score = 100 bits (110), Expect = 1e-18 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 32 CCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAA 91 ||||| |||| | |||| ||||||||||||| | || |||| |||||| | | ||||| Sbjct 62159059 CCTTCCCGGAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAA 62159118 Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCA 151 |||||||| ||| |||||| |||| | ||||| | ||||| ||||||| | Sbjct 62159119 GGCTAAATACCGGCACGAGACCAATAGTCAATAAGTACCTGAAGGGAAAGTTGAAAAGAA 62159178 Query 152 CTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||| | |||||||| || || | ||||| ||| | ||| || || Sbjct 62159179 CTTTGAAGAGAGAGTTCAAGAGGGCATGAAACCGTTAAGAGGTAAACG 62159226 >seq31 Length=124902244 Score = 118 bits (130), Expect = 4e-24 Identities = 94/112 (84%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| Sbjct 50466036 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAA--CTGGTGGA 50466093 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 || || |||||| ||| ||||||||| | ||||| | ||||||| |||| Sbjct 50466094 GGTCCGTAGCGGTCCTGACGTGCAAATAGGTCGTCCGACCTGGGTATGGGGG 50466145 >seq7 Length=182113224 Score = 118 bits (130), Expect = 4e-24 Identities = 86/100 (86%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 ||||||||||||| |||| |||||||||||||||||||||||||| || |||||| | Sbjct 20899847 TGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCC 20899906 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||||||| ||||| | ||||||||||||||| Sbjct 20899907 TGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 20899946 Score = 93.3 bits (102), Expect = 2e-16 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 |||||||||| ||||||||||||||||||||||||||||||| | |||||| ||| | Sbjct 13878759 CTATGCCTGACCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGTCCATAGCGGTCCTGAC 13878818 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATA 676 |||||||| | || || | |||||||| Sbjct 13878819 GTGCAAATAGGTCATCTGACCTGGGTATA 13878847 >seq28 Length=122082543 Score = 116 bits (128), Expect = 2e-23 Identities = 88/104 (85%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 ||||||||||||||||| |||| ||||||||||||||||||||||||| || || | Sbjct 33755103 ATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGTG 33755044 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 33755043 GTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 33755000 >seq16 Length=151834684 Score = 105 bits (116), Expect = 3e-20 Identities = 119/157 (76%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 146261115 GAGTCGGATTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 146261174 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 146261175 ACCGGCACGAGACCGATAGTCAACAAGTA-CCTAAGGGAAAGTTGAAAAGAACTTTG--A 146261231 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| ||| | ||| || Sbjct 146261232 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAA 146261268 Score = 75.2 bits (82), Expect = 5e-11 Identities = 80/104 (77%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAAC----TATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 |||| |||| |||||||||||||| ||||||| |||| ||||||||||| ||| Sbjct 143155008 TGTTAGGACGGGAAAGATGGTGAACTATGTATGCCTAGGCAGGGCGAAGCCAGAGG-AAC 143154950 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||| |||||| || || ||| ||| ||||||| | ||||| Sbjct 143154949 TCTGCTGGAGGTTCAGAGTGGTCCTGATGTGCAAACTGGTCGTC 143154906 >seq25 Length=129401213 Score = 102 bits (112), Expect = 3e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 |||| |||||||||||||||||||||||||| || |||||| ||| ||||||||||| | Sbjct 15519776 AGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGT 15519835 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 |||| | ||||||||||||||| Sbjct 15519836 CGTCCGACCTGGGTATAGGGGCGA 15519859 >seq27 Length=130694993 Score = 89.7 bits (98), Expect = 2e-15 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 ||||||||||||||||| || |||||||||||||||||||||||||| | ||| Sbjct 105238134 ATGGTGAACTATGCCTGGGCAGATCGAAGCCAGAGGAAACTCTGGTGGAGGTCCATAGCA 105238193 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||| | ||||||| | | ||| | ||||||| ||||||| Sbjct 105238194 GTCCTGACTTGCAAATTGGTGGTCCGACCTGGGTATTGGGGCGA 105238237 >seq35 Length=90702639 Score = 86.0 bits (94), Expect = 3e-14 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||| ||||||||||||||| |||||| |||| |||| ||||||||||||||| Sbjct 5146885 TTGGGACCTGAAAGATGGTGAACTCTGCCTGGGCAGGGCAAAGCTAGAGGAAACTCTGGT 5146944 Query 626 GGAGGCTCGCAG-CGGTTCTGGCGTGCAAAT 655 ||||| || | | ||||||| ||||||| Sbjct 5146945 GGAGG-TCTCTGTTGGTTCTGATATGCAAAT 5146974 >seq1 Length=195471971 Score = 80.6 bits (88), Expect = 1e-12 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 122357227 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 122357168 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA 128 | ||| ||||||||||| ||||||| Sbjct 122357167 ACGGGCATGAGACCGATAGTCAACAAGTA 122357139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079995559850