Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq34 244 2e-62 seq1 232 1e-58 seq7 134 2e-29 seq9 132 8e-29 seq23 113 7e-23 seq37 109 9e-22 seq25 89.7 8e-16 seq27 84.2 3e-14 seq26 73.4 6e-11 seq8 73.4 6e-11 >seq34 Length=94987271 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 39847897 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 39847839 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 39847838 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 39847780 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 39847779 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 39847720 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 39847719 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 39847660 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 39847659 ATCAATCTGTC 39847649 >seq1 Length=195471971 Score = 232 bits (256), Expect = 1e-58 Identities = 205/251 (82%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||| | Sbjct 56782104 GTCAGTGTAGCGCGCGTGCAGCCCCGGGCATGTAAGGGCATCACAGACCTGTTATTGC-T 56782162 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACCA-T 130 ||| || | |||||| | |||| | ||||||||||||| | | |||| ||| | Sbjct 56782163 CAATCT-CAGGTGGCTGAACGCCACTTGTCCCTCTAAGAATTTGAGGGACACCGACCGCT 56782221 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||| ||||||||||||||||||||||| Sbjct 56782222 CGGGGGTCGTGTAACTAGTTAGCATGCCAGAGTCTCATTCGTTATCGGAATTAACCAGAC 56782281 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||| ||||||||||||||||||| ||||| |||||||||| Sbjct 56782282 AAATCGCTCCACCAACTAAGAATGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 56782341 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 56782342 ATCAATCTGTC 56782352 >seq7 Length=182113224 Score = 134 bits (148), Expect = 2e-29 Identities = 162/218 (74%), Gaps = 17/218 (8%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| |||| |||| | ||||||||| ||||| ||||||||||| ||| | Sbjct 27121380 GTCAGTGTAGCGCCTGTGCAGCCCTGGACATCTAAGAGCATCTCAGACCTGTTACTGC-T 27121322 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCATA 131 | | ||| | | ||| | |||| | |||||||||||||| | || ||| Sbjct 27121321 CTATCTTGGGT-GACTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGATGCCGACCG-- 27121265 Query 132 GTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 ||| ||| ||| |||||| | | ||||| ||| ||||||||||||||| Sbjct 27121264 --CGAGGGGCTCTTGTAACTAGTTAGCATGCCAGAGTCTCATTCATTATCGGAATTAACC 27121207 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 ||||||||| |||||| |||||||||||||||||||| Sbjct 27121206 AGACAAATCGTTCCACCCACTAAGAACGGCCATGCACC 27121169 Score = 78.8 bits (86), Expect = 1e-12 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | || ||||| || |||||| |||||||||||||||| | || || || Sbjct 70952081 CTAATTAGCATGCCAAAGTCTCATTTGTTATCAGAATTAACCAGACAAACCGCTTCATCA 70952140 Query 202 ACTAAGAACGGCCATGCA 219 ||||||| ||||||||| Sbjct 70952141 GCTAAGAATGGCCATGCA 70952158 >seq9 Length=156508116 Score = 132 bits (146), Expect = 8e-29 Identities = 183/255 (72%), Gaps = 32/255 (13%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| | ||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 78773940 GTCAGTGTATCTCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 78773882 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131 ||| |||| | |||||||||||||| | | || || | Sbjct 78773881 CAAC----------------GCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGAC--TG 78773840 Query 132 GTCGATGGGGCTATTTAGCAGGTTA-------AG-GTCTCGTTCGTTATCGGAATTAACC 183 ||| |||| | || | |||| || ||||| ||||||||| |||||||| Sbjct 78773839 CTCG--GGGGTTGCATAACTAGTTATTATGCCAGAGTCTCTTTCGTTATCTTAATTAACC 78773782 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 |||||| | ||| |||||||||||| ||| | | |||||| ||| ||||| |||||| Sbjct 78773781 AGACAACTTGCTCTGCCAACTAAGAACAGCCTTACCCCACCAACCACGGAATCGAGAAAG 78773722 Query 244 AGCTATCAATCTGTC 258 |||||||| |||||| Sbjct 78773721 AGCTATCATTCTGTC 78773707 >seq23 Length=145441459 Score = 113 bits (124), Expect = 7e-23 Identities = 151/206 (73%), Gaps = 7/206 (3%) Strand=Plus/Plus Query 21 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 80 ||||| | ||| |||| | |||||||||||||||| |||| ||||||||| || | || Sbjct 97549690 GTAGCTCCTGTGTAGCCCTGGACATCTAAGGGCATCATAGACTTGTTATTGC-TCTATCT 97549748 Query 81 TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG--TCGATG 138 | |||||| | ||| | | | |||||||||| | || | | || Sbjct 97549749 -CGGGTGGCTGAACACCACTTGCCTCTCTAAGAAGTTGGGGGACATGGGCTGCTTGCTTG 97549807 Query 139 GGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 ||| ||| |||||| | | ||||||||| ||| | ||||| ||||||||||||||| Sbjct 97549808 GGGTAGCTAGTTAGCACGCCAGAGTCTCGTTCATTACCAGAATTTACCAGACAAATCACT 97549867 Query 196 CCACCAACTAAGAACGGCCATGCACC 221 |||||||||||||| ||||||||||| Sbjct 97549868 CCACCAACTAAGAATGGCCATGCACC 97549893 >seq37 Length=171031299 Score = 109 bits (120), Expect = 9e-22 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||| | ||||||||||||||||| ||||| |||||||||| ||||||| ||||||| || Sbjct 76128859 TTATTGAAATTAACCAGACAAATCGCTCCAACAACTAAGAATGGCCATGGACCACCATCC 76128918 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||| ||||||||||||||||||||| Sbjct 76128919 ACGCAATTGAGAAAGAGCTATCAATCTGTC 76128948 >seq25 Length=129401213 Score = 89.7 bits (98), Expect = 8e-16 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| |||| || | | |||||||||||||||||||||||||||||| || Sbjct 3754654 GTCAGTGTAGCGCATGTGCAGCTCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 3754712 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| ||| |||||| |||| | || || |||||||| Sbjct 3754713 CAATCTT-GGGTGGCTGAGCGCCACTTGTTCCGCTAAGAAG 3754752 >seq27 Length=130694993 Score = 84.2 bits (92), Expect = 3e-14 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 || ||||||||||||| |||||||| |||||||||||| | ||||| |||||| | || Sbjct 51521542 ATTGGAATTAACCAGAGGAATCACTCTACCAACTAAGAATGACCATGATCCACCATCTAT 51521601 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 | || |||||||||||| ||||||| Sbjct 51521602 GGTATTGAGAAAGAGCTAT-TATCTGTC 51521628 >seq26 Length=124595110 Score = 73.4 bits (80), Expect = 6e-11 Identities = 74/96 (77%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| || | ||| |||||||||||| |||| |||||||| ||||| ||||| | Sbjct 3260740 TCTCATTTCTCATCAGAATTAACCAGAGAAATTACTCCACC----AAGAATTACCATGAA 3260795 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||| | || | || ||||||||||| |||||| Sbjct 3260796 CCACCATCTATGGTATTGAGAAAGAGCTAACAATCT 3260831 >seq8 Length=160039680 Score = 73.4 bits (80), Expect = 6e-11 Identities = 59/70 (84%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 155 TAAG-GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGC 213 |||| ||||| || |||| |||||||||||||||| || |||||||| ||||||| ||| Sbjct 75305779 TAAGAGTCTCATTTGTTACCGGAATTAACCAGACAGGTCTCTCCACCAGCTAAGAATGGC 75305838 Query 214 CATGCACCAC 223 |||| | ||| Sbjct 75305839 CATGAAACAC 75305848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796798402167