Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq26 338 1e-90 seq36 269 5e-70 seq28 255 1e-65 seq30 248 1e-63 seq1 246 5e-63 seq33 183 5e-44 seq29 179 6e-43 seq23 163 5e-38 seq34 138 2e-30 seq37 131 3e-28 seq172 114 2e-23 seq22 93.3 7e-17 >seq26 Length=124595110 Score = 338 bits (374), Expect = 1e-90 Identities = 252/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 123462172 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 123462113 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 123462112 ACGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 123462053 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 123462052 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 123461993 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||| || || Sbjct 123461992 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACATCCTGCT 123461933 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 123461932 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 123461879 Score = 212 bits (234), Expect = 1e-52 Identities = 162/194 (84%), Gaps = 12/194 (6%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 80399586 CCTATCTCATGACGGTCTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAAC 80399527 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| ||||||||||| ||||||||||||||| ||||||||||||||||||| | Sbjct 80399526 GCTTGGTAAATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGTGA 80399467 Query 172 CGTCGCTATGAA------------CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 ||| ||| ||| |||||||||||| |||||||| |||| ||||||||| Sbjct 80399466 GGTCTCTAAGAACGTTCTTAAACGCGCTTGGCTGCCTCAAGCCAGATATCTCTGTGGTAA 80399407 Query 220 CTTTTCTGGCACCT 233 |||||||| || || Sbjct 80399406 CTTTTCTGACAACT 80399393 Score = 100 bits (110), Expect = 5e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 113929139 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 113929085 >seq36 Length=61431566 Score = 269 bits (298), Expect = 5e-70 Identities = 173/189 (92%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 ||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 40119905 AACAAAACTTTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 40119846 Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 40119845 TCCAACGCTTGGTGAATTCTGCTTTACAATGATAGGAAGAGCCGACATCGAAGGATCAAA 40119786 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 |||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 40119785 AAGCGATGTCGCTATGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTC 40119726 Query 226 TGGCACCTC 234 || ||| || Sbjct 40119725 TGACACGTC 40119717 >seq28 Length=122082543 Score = 255 bits (282), Expect = 1e-65 Identities = 167/184 (91%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110 |||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 17221522 ACCTGTCTCACGATGATCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 17221463 Query 111 CGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA 170 ||| | |||||||||||| |||||||||||||||||||| ||||||| | |||| Sbjct 17221462 CGCCTGGTGAATTCTGCTTCACCATGATAGGAAGAGCCGACATTGAAGGATGATAAAGTG 17221403 Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 17221402 ACGTGGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA 17221343 Query 231 CCTC 234 |||| Sbjct 17221342 CCTC 17221339 Score = 248 bits (274), Expect = 1e-63 Identities = 166/184 (90%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| || |||||||| |||| |||||||||||||||||||||||| |||||||| Sbjct 96081263 CCTGTCTCACGATGGTCTAAATCCAGTTCACGTTCCCTATTAGTGGGTGAAAAATCCAAC 96081204 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC-A 170 |||| |||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 96081203 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGA 96081144 Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 | || | |||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 96081143 ATGTGGTTATGAACGCTTGGCAGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGATA 96081084 Query 231 CCTC 234 |||| Sbjct 96081083 CCTC 96081080 >seq30 Length=120421639 Score = 248 bits (274), Expect = 1e-63 Identities = 164/182 (90%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 ||||| || ||| |||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 54189948 CTGTCCCACGACAGTCTAAACCCAGTTCACGTTCCCTATTAGTGGGTAAACAATCCAACG 54190007 Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 ||| |||||||||||| ||||||||||||||||||||| |||||||| |||| || Sbjct 54190008 CTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAGAAAGTGAC 54190067 Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 54190068 GTCACTATGAATGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACC 54190127 Query 233 TC 234 || Sbjct 54190128 TC 54190129 Score = 145 bits (160), Expect = 1e-32 Identities = 142/183 (78%), Gaps = 9/183 (5%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| |||||||||||||| ||| |||||||||| | ||||| Sbjct 44749536 CCTGTCTCACTGTGGTCTAAACCCAGCGCACATTCCCTATTAATTGGTGAGT-------- 44749587 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| |||||||||||| ||||||| | || | |||||| |||||||||||||| | Sbjct 44749588 GCTTGGTGAATTCTGCTTCACAATGATAG-AGGAACTGACATCAAAGGATCAAAAAGCTA 44749646 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 ||| |||||| | |||||| ||| ||||| |||||||||||| |||||||||| ||| Sbjct 44749647 CGTTGCTATGGGCACTTGGCCACCATTAGCCAATTATCCCTGTGGCAACTTTTCTGACAC 44749706 Query 232 CTC 234 ||| Sbjct 44749707 CTC 44749709 >seq1 Length=195471971 Score = 246 bits (272), Expect = 5e-63 Identities = 167/186 (90%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 100180245 TCCTCAGTAGGGTAAAACTAAC-TGTCTCATGACTGTCTAAACCCAGCTCACTTTCCCTA 100180303 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||| |||| |||||||||||| |||||||||||||| || Sbjct 100180304 ATAGTGGGTGAACAATCCAATGCTTGGAGAATTCTGCTTCACAATGATAGGAAGAGCTGA 100180363 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| ||||||||||||||||| |||||||||| | ||||| ||||||||||| |||||| Sbjct 100180364 CATCAAAGGATCAAAAAGCAACATCGCTATGAATGTTTGGCAGCCACAAGCCATTTATCC 100180423 Query 211 CTGTGG 216 |||||| Sbjct 100180424 CTGTGG 100180429 Score = 118 bits (130), Expect = 2e-24 Identities = 137/181 (76%), Gaps = 13/181 (7%) Strand=Plus/Minus Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA------AGGATCAAAAAG--CAACG 173 ||||||||| |||||||||||||| ||||| || |||||||||| ||||| Sbjct 65848937 TTCTGCTTCAA-ATGATAGGAAGAGCTGACATTGACATCAAAGGATCAAAAGTGACAACG 65848879 Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 | ||||||| | ||||||||||||||| || |||||||||||||||||||||| ||||| Sbjct 65848878 TTGCTATGAGCACTTGGCTGCCACAAGTCATATATCCCTGTGGTAACTTTTCTGACACCT 65848819 Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || | ||| | || |||||||| ||| ||||||||| || ||||||| Sbjct 65848818 ---GCTTAAAACCCAAAAGGTTAAAAGGATCATGAGGTTGCACTTTCAT-GTCTGTATTC 65848763 Query 294 A 294 | Sbjct 65848762 A 65848762 >seq33 Length=98207768 Score = 183 bits (202), Expect = 5e-44 Identities = 112/119 (94%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 35981703 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 35981762 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 35981763 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG 35981821 >seq29 Length=120129022 Score = 179 bits (198), Expect = 6e-43 Identities = 134/157 (85%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| Sbjct 78351173 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACACTTGGCCGCCA 78351114 Query 197 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT 256 ||||||||||||||||||||||||||||||| |||||| || | ||| | || | Sbjct 78351113 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCG 78351054 Query 257 AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||| ||||| | |||||| ||| ||||||| Sbjct 78351053 GAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 78351017 >seq23 Length=145441459 Score = 163 bits (180), Expect = 5e-38 Identities = 147/191 (77%), Gaps = 34/191 (18%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAAC---------CCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 |||||||| |||||||||||| |||||||||||||| ||||||||||||||| Sbjct 110059658 CTGTCTCACGACGGTCTAAACTCAGCTCACCCAGCTCACGTTCCTTATTAGTGGGTGAAC 110059717 Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 |||||||||||| ||||||||||| | |||||||||||||||||||||||||||| Sbjct 110059718 AATCCAACGCTTGGTGAATTCTGCTT---AACGATAGGAAGAGCCGACATCGAAGGATCA 110059774 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 |||| || ||||||||||||||||||||||||||||||| Sbjct 110059775 AAAA----------------------GCCGCCACAAGCCAGTTATCCCTGTGGTAACTTT 110059812 Query 224 TCTGGCACCTC 234 |||| || ||| Sbjct 110059813 TCTGACATCTC 110059823 >seq34 Length=94987271 Score = 138 bits (152), Expect = 2e-30 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||| ||||||||||||||| | || ||||||||||||| ||||||||||||||||||| Sbjct 22878190 GACATTGAAGGATCAAAAAGCGATGTGGCTATGAACGCTTAGCTGCCACAAGCCAGTTAT 22878131 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268 |||| |||||||||||||| |||||| ||| | ||| | || | ||||||| | Sbjct 22878130 CCCTATGGTAACTTTTCTGACACCTCCAGCTTAAAACCCAAAAGGTCAGAAGGATCCTGA 22878071 Query 269 GGCCACACTTTCATGGTTTGTATT 292 ||| | |||| ||||||| |||| Sbjct 22878070 AGCCCCGCTTTTATGGTTTATATT 22878047 >seq37 Length=171031299 Score = 131 bits (144), Expect = 3e-28 Identities = 83/90 (92%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 21680560 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTT 21680619 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGG 159 | |||||||||||||| ||||||||||| Sbjct 21680620 CACAATGATAGGAAGAGCTGACATCGAAGG 21680649 >seq172 Length=3760957 Score = 114 bits (126), Expect = 2e-23 Identities = 136/181 (75%), Gaps = 10/181 (6%) Strand=Plus/Minus Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA------AGGATCAAAAAGCA--ACG 173 ||||||||| |||||||||||||| ||||| || |||||||||| | ||| Sbjct 284843 TTCTGCTTCAA-ATGATAGGAAGAGCTGACATTGACATCAAAGGATCAAAAGTGACTACG 284785 Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 | ||||||| | ||||||||||||||| || |||||||| ||||||||||||| ||||| Sbjct 284784 TTGCTATGAGCACTTGGCTGCCACAAGTCAAATATCCCTGCGGTAACTTTTCTGACACCT 284725 Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | || | || | || |||||||| ||| | ||||||||| || ||||||| Sbjct 284724 CCTGCTTAAAGCCCAAAAGGTTAAAAGGATCATGAGGTCGCACTTTCAT-GTCTGTATTC 284666 Query 294 A 294 | Sbjct 284665 A 284665 >seq22 Length=149736546 Score = 93.3 bits (102), Expect = 7e-17 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 ||||||||||||||||||||||||||||||||||| |||||| || | ||| | | Sbjct 49236450 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAG 49236509 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 49236510 GTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 49236550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854398231392