Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29]
207 sequences; 2,807,715,301 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq26 338 1e-90
seq36 269 5e-70
seq28 255 1e-65
seq30 248 1e-63
seq1 246 5e-63
seq33 183 5e-44
seq29 179 6e-43
seq23 163 5e-38
seq34 138 2e-30
seq37 131 3e-28
seq172 114 2e-23
seq22 93.3 7e-17
>seq26
Length=124595110
Score = 338 bits (374), Expect = 1e-90
Identities = 252/294 (86%), Gaps = 1/294 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 123462172 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 123462113
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 123462112 ACGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 123462053
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 123462052 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 123461993
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 123461992 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACATCCTGCT 123461933
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | || | |||||||| ||||| | |||||| ||| |||||||
Sbjct 123461932 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 123461879
Score = 212 bits (234), Expect = 1e-52
Identities = 162/194 (84%), Gaps = 12/194 (6%)
Strand=Plus/Minus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 80399586 CCTATCTCATGACGGTCTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAAC 80399527
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 80399526 GCTTGGTAAATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGTGA 80399467
Query 172 CGTCGCTATGAA------------CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219
||| ||| ||| |||||||||||| |||||||| |||| |||||||||
Sbjct 80399466 GGTCTCTAAGAACGTTCTTAAACGCGCTTGGCTGCCTCAAGCCAGATATCTCTGTGGTAA 80399407
Query 220 CTTTTCTGGCACCT 233
|||||||| || ||
Sbjct 80399406 CTTTTCTGACAACT 80399393
Score = 100 bits (110), Expect = 5e-19
Identities = 55/55 (100%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113929139 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 113929085
>seq36
Length=61431566
Score = 269 bits (298), Expect = 5e-70
Identities = 173/189 (92%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 40119905 AACAAAACTTTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 40119846
Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 40119845 TCCAACGCTTGGTGAATTCTGCTTTACAATGATAGGAAGAGCCGACATCGAAGGATCAAA 40119786
Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225
|||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 40119785 AAGCGATGTCGCTATGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTC 40119726
Query 226 TGGCACCTC 234
|| ||| ||
Sbjct 40119725 TGACACGTC 40119717
>seq28
Length=122082543
Score = 255 bits (282), Expect = 1e-65
Identities = 167/184 (91%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17221522 ACCTGTCTCACGATGATCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 17221463
Query 111 CGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA 170
||| | |||||||||||| |||||||||||||||||||| ||||||| | ||||
Sbjct 17221462 CGCCTGGTGAATTCTGCTTCACCATGATAGGAAGAGCCGACATTGAAGGATGATAAAGTG 17221403
Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 17221402 ACGTGGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA 17221343
Query 231 CCTC 234
||||
Sbjct 17221342 CCTC 17221339
Score = 248 bits (274), Expect = 1e-63
Identities = 166/184 (90%), Gaps = 1/184 (1%)
Strand=Plus/Minus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| || |||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct 96081263 CCTGTCTCACGATGGTCTAAATCCAGTTCACGTTCCCTATTAGTGGGTGAAAAATCCAAC 96081204
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC-A 170
|||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 96081203 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGA 96081144
Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230
| || | |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 96081143 ATGTGGTTATGAACGCTTGGCAGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGATA 96081084
Query 231 CCTC 234
||||
Sbjct 96081083 CCTC 96081080
>seq30
Length=120421639
Score = 248 bits (274), Expect = 1e-63
Identities = 164/182 (90%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
||||| || ||| |||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 54189948 CTGTCCCACGACAGTCTAAACCCAGTTCACGTTCCCTATTAGTGGGTAAACAATCCAACG 54190007
Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172
||| |||||||||||| ||||||||||||||||||||| |||||||| |||| ||
Sbjct 54190008 CTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAGAAAGTGAC 54190067
Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 54190068 GTCACTATGAATGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACC 54190127
Query 233 TC 234
||
Sbjct 54190128 TC 54190129
Score = 145 bits (160), Expect = 1e-32
Identities = 142/183 (78%), Gaps = 9/183 (5%)
Strand=Plus/Plus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| |||||||||||||| ||| |||||||||| | |||||
Sbjct 44749536 CCTGTCTCACTGTGGTCTAAACCCAGCGCACATTCCCTATTAATTGGTGAGT-------- 44749587
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| |||||||||||| ||||||| | || | |||||| |||||||||||||| |
Sbjct 44749588 GCTTGGTGAATTCTGCTTCACAATGATAG-AGGAACTGACATCAAAGGATCAAAAAGCTA 44749646
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231
||| |||||| | |||||| ||| ||||| |||||||||||| |||||||||| |||
Sbjct 44749647 CGTTGCTATGGGCACTTGGCCACCATTAGCCAATTATCCCTGTGGCAACTTTTCTGACAC 44749706
Query 232 CTC 234
|||
Sbjct 44749707 CTC 44749709
>seq1
Length=195471971
Score = 246 bits (272), Expect = 5e-63
Identities = 167/186 (90%), Gaps = 1/186 (1%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 100180245 TCCTCAGTAGGGTAAAACTAAC-TGTCTCATGACTGTCTAAACCCAGCTCACTTTCCCTA 100180303
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||| |||| |||||||||||| |||||||||||||| ||
Sbjct 100180304 ATAGTGGGTGAACAATCCAATGCTTGGAGAATTCTGCTTCACAATGATAGGAAGAGCTGA 100180363
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|||| ||||||||||||||||| |||||||||| | ||||| ||||||||||| ||||||
Sbjct 100180364 CATCAAAGGATCAAAAAGCAACATCGCTATGAATGTTTGGCAGCCACAAGCCATTTATCC 100180423
Query 211 CTGTGG 216
||||||
Sbjct 100180424 CTGTGG 100180429
Score = 118 bits (130), Expect = 2e-24
Identities = 137/181 (76%), Gaps = 13/181 (7%)
Strand=Plus/Minus
Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA------AGGATCAAAAAG--CAACG 173
||||||||| |||||||||||||| ||||| || |||||||||| |||||
Sbjct 65848937 TTCTGCTTCAA-ATGATAGGAAGAGCTGACATTGACATCAAAGGATCAAAAGTGACAACG 65848879
Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233
| ||||||| | ||||||||||||||| || |||||||||||||||||||||| |||||
Sbjct 65848878 TTGCTATGAGCACTTGGCTGCCACAAGTCATATATCCCTGTGGTAACTTTTCTGACACCT 65848819
Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|| | ||| | || |||||||| ||| ||||||||| || |||||||
Sbjct 65848818 ---GCTTAAAACCCAAAAGGTTAAAAGGATCATGAGGTTGCACTTTCAT-GTCTGTATTC 65848763
Query 294 A 294
|
Sbjct 65848762 A 65848762
>seq33
Length=98207768
Score = 183 bits (202), Expect = 5e-44
Identities = 112/119 (94%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 35981703 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 35981762
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 35981763 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG 35981821
>seq29
Length=120129022
Score = 179 bits (198), Expect = 6e-43
Identities = 134/157 (85%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196
||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||
Sbjct 78351173 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACACTTGGCCGCCA 78351114
Query 197 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT 256
||||||||||||||||||||||||||||||| |||||| || | ||| | || |
Sbjct 78351113 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCG 78351054
Query 257 AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||||| ||||| | |||||| ||| |||||||
Sbjct 78351053 GAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 78351017
>seq23
Length=145441459
Score = 163 bits (180), Expect = 5e-38
Identities = 147/191 (77%), Gaps = 34/191 (18%)
Strand=Plus/Plus
Query 53 CTGTCTCATGACGGTCTAAAC---------CCAGCTCACGTTCCCTATTAGTGGGTGAAC 103
|||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 110059658 CTGTCTCACGACGGTCTAAACTCAGCTCACCCAGCTCACGTTCCTTATTAGTGGGTGAAC 110059717
Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163
|||||||||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 110059718 AATCCAACGCTTGGTGAATTCTGCTT---AACGATAGGAAGAGCCGACATCGAAGGATCA 110059774
Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223
|||| || |||||||||||||||||||||||||||||||
Sbjct 110059775 AAAA----------------------GCCGCCACAAGCCAGTTATCCCTGTGGTAACTTT 110059812
Query 224 TCTGGCACCTC 234
|||| || |||
Sbjct 110059813 TCTGACATCTC 110059823
>seq34
Length=94987271
Score = 138 bits (152), Expect = 2e-30
Identities = 117/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208
||||| ||||||||||||||| | || ||||||||||||| |||||||||||||||||||
Sbjct 22878190 GACATTGAAGGATCAAAAAGCGATGTGGCTATGAACGCTTAGCTGCCACAAGCCAGTTAT 22878131
Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268
|||| |||||||||||||| |||||| ||| | ||| | || | ||||||| |
Sbjct 22878130 CCCTATGGTAACTTTTCTGACACCTCCAGCTTAAAACCCAAAAGGTCAGAAGGATCCTGA 22878071
Query 269 GGCCACACTTTCATGGTTTGTATT 292
||| | |||| ||||||| ||||
Sbjct 22878070 AGCCCCGCTTTTATGGTTTATATT 22878047
>seq37
Length=171031299
Score = 131 bits (144), Expect = 3e-28
Identities = 83/90 (92%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 21680560 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTT 21680619
Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGG 159
| |||||||||||||| |||||||||||
Sbjct 21680620 CACAATGATAGGAAGAGCTGACATCGAAGG 21680649
>seq172
Length=3760957
Score = 114 bits (126), Expect = 2e-23
Identities = 136/181 (75%), Gaps = 10/181 (6%)
Strand=Plus/Minus
Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA------AGGATCAAAAAGCA--ACG 173
||||||||| |||||||||||||| ||||| || |||||||||| | |||
Sbjct 284843 TTCTGCTTCAA-ATGATAGGAAGAGCTGACATTGACATCAAAGGATCAAAAGTGACTACG 284785
Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233
| ||||||| | ||||||||||||||| || |||||||| ||||||||||||| |||||
Sbjct 284784 TTGCTATGAGCACTTGGCTGCCACAAGTCAAATATCCCTGCGGTAACTTTTCTGACACCT 284725
Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| || | || | || |||||||| ||| | ||||||||| || |||||||
Sbjct 284724 CCTGCTTAAAGCCCAAAAGGTTAAAAGGATCATGAGGTCGCACTTTCAT-GTCTGTATTC 284666
Query 294 A 294
|
Sbjct 284665 A 284665
>seq22
Length=149736546
Score = 93.3 bits (102), Expect = 7e-17
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252
||||||||||||||||||||||||||||||||||| |||||| || | ||| | |
Sbjct 49236450 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAG 49236509
Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| | |||||||| ||||| | |||||| ||| |||||||
Sbjct 49236510 GTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 49236550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854398231392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |