Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq34 82.4 9e-14 seq22 82.4 9e-14 seq37 73.4 5e-11 >seq34 Length=94987271 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 39847257 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 39847199 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 39847198 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 39847158 >seq22 Length=149736546 Score = 82.4 bits (90), Expect = 9e-14 Identities = 82/102 (80%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCGGGC 68 ||||||||||||||| || |||| |||||||| |||||||| ||| |||| | ||| Sbjct 3201346 AAACCAACAAAATAGA-AC-CACGGTCCTATTCCATTATTCCTAGCTGCAGTATCCAGGC 3201289 Query 69 GTAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | |||||||||||||||||||||||| |||| ||||| Sbjct 3201288 GGCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 3201247 >seq37 Length=171031299 Score = 73.4 bits (80), Expect = 5e-11 Identities = 78/101 (77%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||| ||||||| ||| ||||||||| ||||||| ||| |||| | |||| Sbjct 24008730 AAACCAATAAAATAGAACCGCG-GTCCTATTCCATTATTCTTAGCTGTGGTATCCAGGCG 24008672 Query 70 ---TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | |||||||||||| ||||||||||| |||| ||||| Sbjct 24008671 GCTTGGGCCTGCTTTGAATACTCTAATTTTTTCAAAGTAAA 24008631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595198806438