Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq34 194 3e-47 seq9 161 2e-37 seq25 132 9e-29 seq1 89.7 1e-15 seq7 75.2 2e-11 >seq34 Length=94987271 Score = 194 bits (214), Expect = 3e-47 Identities = 200/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 39847799 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 39847856 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 39847857 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 39847916 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 39847917 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 39847976 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| | ||| ||| ||||||||| Sbjct 39847977 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGCCATAAGCTTGCGTTGATT 39848036 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 39848037 AAGTCCCTGCCCTTTGTA 39848054 >seq9 Length=156508116 Score = 161 bits (178), Expect = 2e-37 Identities = 170/221 (77%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||||||||||||||||||||||||| | |||| ||||||| | |||||| Sbjct 78773879 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTGCACGCGAGATACACT 78773937 Query 169 GACAGAGCCAACGAGTTCAT-CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT 227 ||| | || | || | | ||| || |||| ||| |||||| | | || | | Sbjct 78773938 GACTGGCTCAGCATGTGCCTACACTATGCCCGGCAGGCGCGGGTAACCCATTGAACCCCA 78773997 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 ||||| ||||||| | | |||||||||||| | | ||||||||||| | |||||| | Sbjct 78773998 TTCGTGATGGGGATCGGGGATTGCAATTATTCCCCACCAACGAGGAATTCTCAGTAAGTG 78774057 Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| || ||||||| |||||||||||||||| Sbjct 78774058 CAGGTCATAAGCTTGCATTGATTAAGTCCCTGCCCTTTGTA 78774098 >seq25 Length=129401213 Score = 132 bits (146), Expect = 9e-29 Identities = 167/225 (74%), Gaps = 11/225 (5%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||| ||||| |||||||||||||||||||||||||||||| | | || |||| |||||| Sbjct 3754719 AAGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGAGCTGCACATGCGCTA 3754661 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA- 223 ||||||| | || | || | | ||| | || || |||||| || |||||| Sbjct 3754660 CACTGACTGGCTCAGTGTGTGCCTACCCTACACAGGCAGACACGGGTAA-CTCGTTAAAC 3754602 Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 | | ||||| ||||||| | | |||||||||||| | | | ||||||||| || |||| Sbjct 3754601 CCCATTCGTGATGGGGATTGGGGATTGCAATTATTCCCCATGGACGAGGAATTCCCAGTA 3754542 Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| ||||| ||| ||| | ||||||| |||||||| Sbjct 3754541 AGTGCGGGTCATAAGC-----TTG---AAGTCCCTGACCTTTGTA 3754505 >seq1 Length=195471971 Score = 89.7 bits (98), Expect = 1e-15 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||| Sbjct 56782201 TTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTGA 56782144 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||| ||| | |||| ||||||||||||||||||| Sbjct 56782143 TGCCCTTACATGCCCGGGGCTGCACGCGCGCTACACTGAC 56782104 >seq7 Length=182113224 Score = 75.2 bits (82), Expect = 2e-11 Identities = 148/218 (68%), Gaps = 21/218 (10%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | || | | ||| | ||| || ||||||||||| | Sbjct 27121282 CTTCTTAGAGGGACAAGTGGCGTTCAGTC-ACCCAAGATAGAG-CAGTAACAGGTCTGAG 27121339 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||| ||||||||| | |||| |||| ||||||||||||| | | || || Sbjct 27121340 ATGCTCTTAGATGTCCAGGGCTGCACAGGCGCTACACTGACTGGCTTAGCGTGT------ 27121393 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 27121394 -----GCC-------TAGGGTAACCCATTGAACCCCATTCGTGATGGGGATCGGGGATTG 27121441 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 |||||||| | | | ||| |||||| || |||||| || Sbjct 27121442 CAATTATTCCCCATGAACAAGGAATTCCCAGTAAGTGC 27121479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198039296