Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29]
207 sequences; 2,807,715,301 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq34 194 3e-47
seq9 161 2e-37
seq25 132 9e-29
seq1 89.7 1e-15
seq7 75.2 2e-11
>seq34
Length=94987271
Score = 194 bits (214), Expect = 3e-47
Identities = 200/258 (78%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 39847799 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 39847856
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || | |
Sbjct 39847857 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 39847916
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 39847917 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 39847976
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| ||| | ||| ||| |||||||||
Sbjct 39847977 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGCCATAAGCTTGCGTTGATT 39848036
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 39848037 AAGTCCCTGCCCTTTGTA 39848054
>seq9
Length=156508116
Score = 161 bits (178), Expect = 2e-37
Identities = 170/221 (77%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168
||||| |||||||||||||||||||||||||||||| | |||| ||||||| | ||||||
Sbjct 78773879 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTGCACGCGAGATACACT 78773937
Query 169 GACAGAGCCAACGAGTTCAT-CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT 227
||| | || | || | | ||| || |||| ||| |||||| | | || | |
Sbjct 78773938 GACTGGCTCAGCATGTGCCTACACTATGCCCGGCAGGCGCGGGTAACCCATTGAACCCCA 78773997
Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287
||||| ||||||| | | |||||||||||| | | ||||||||||| | |||||| |
Sbjct 78773998 TTCGTGATGGGGATCGGGGATTGCAATTATTCCCCACCAACGAGGAATTCTCAGTAAGTG 78774057
Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||| ||| || ||||||| ||||||||||||||||
Sbjct 78774058 CAGGTCATAAGCTTGCATTGATTAAGTCCCTGCCCTTTGTA 78774098
>seq25
Length=129401213
Score = 132 bits (146), Expect = 9e-29
Identities = 167/225 (74%), Gaps = 11/225 (5%)
Strand=Plus/Minus
Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164
||| ||||| |||||||||||||||||||||||||||||| | | || |||| ||||||
Sbjct 3754719 AAGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGAGCTGCACATGCGCTA 3754661
Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA- 223
||||||| | || | || | | ||| | || || |||||| || ||||||
Sbjct 3754660 CACTGACTGGCTCAGTGTGTGCCTACCCTACACAGGCAGACACGGGTAA-CTCGTTAAAC 3754602
Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283
| | ||||| ||||||| | | |||||||||||| | | | ||||||||| || ||||
Sbjct 3754601 CCCATTCGTGATGGGGATTGGGGATTGCAATTATTCCCCATGGACGAGGAATTCCCAGTA 3754542
Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| ||| ||||| ||| ||| | ||||||| ||||||||
Sbjct 3754541 AGTGCGGGTCATAAGC-----TTG---AAGTCCCTGACCTTTGTA 3754505
>seq1
Length=195471971
Score = 89.7 bits (98), Expect = 1e-15
Identities = 82/100 (82%), Gaps = 3/100 (3%)
Strand=Plus/Minus
Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
||||||||||||| | ||| | |||| || | ||||| |||||||||||||||||
Sbjct 56782201 TTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTGA 56782144
Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171
|||||||| ||| | |||| |||||||||||||||||||
Sbjct 56782143 TGCCCTTACATGCCCGGGGCTGCACGCGCGCTACACTGAC 56782104
>seq7
Length=182113224
Score = 75.2 bits (82), Expect = 2e-11
Identities = 148/218 (68%), Gaps = 21/218 (10%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | || | | ||| | ||| || ||||||||||| |
Sbjct 27121282 CTTCTTAGAGGGACAAGTGGCGTTCAGTC-ACCCAAGATAGAG-CAGTAACAGGTCTGAG 27121339
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||| ||||||||| | |||| |||| ||||||||||||| | | || ||
Sbjct 27121340 ATGCTCTTAGATGTCCAGGGCTGCACAGGCGCTACACTGACTGGCTTAGCGTGT------ 27121393
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 27121394 -----GCC-------TAGGGTAACCCATTGAACCCCATTCGTGATGGGGATCGGGGATTG 27121441
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288
|||||||| | | | ||| |||||| || |||||| ||
Sbjct 27121442 CAATTATTCCCCATGAACAAGGAATTCCCAGTAAGTGC 27121479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947198039296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |