Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq34 91.5 2e-16 seq1 87.8 3e-15 seq33 84.2 4e-14 seq26 84.2 4e-14 seq9 80.6 4e-13 >seq34 Length=94987271 Score = 91.5 bits (100), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 70963727 GTACGAGAGGAACCAAAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 70963784 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | |||||||||| ||||| |||||||| |||||||||||||||||||||||| |||| Sbjct 70963785 GGGGCGAAGCTACTATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC-TGCC 70963842 >seq1 Length=195471971 Score = 87.8 bits (96), Expect = 3e-15 Identities = 93/119 (78%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | ||| | | || | || |||| || || | Sbjct 102628295 GTATGAGAGGAACCGCAGG-TTCAGAC-ATTTGCTGTATGTGCTTGGCTGAGGAGCCAAT 102628238 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | |||||||||||||||| |||||||| || | ||||||||||||||||||| |||| Sbjct 102628237 GGGGCGAAGCTACCATCTGTGGGATTATGACTAAGCGCCTCTAAGTCAGAATCC-TGCC 102628180 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| ||| | |||||| | ||||| | || | || |||| || || | Sbjct 100180216 GTACGAGAGGAATCGCAGG-TTCAGAC-ATTTGGTGTATGTGATTGGCTGAGGAGCCAAT 100180159 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || ||||||||||||| |||||||| || || |||||||||||||||||| Sbjct 100180158 GGGGCAAAGCTACCATCTGTGGGATTATGACTAAATGCCTCTAAGTCAGAATCC 100180105 >seq33 Length=98207768 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| |||||||| Sbjct 11143910 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 11143969 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 11143970 CTGAACGCCTCTAAGTCAGAATCC 11143993 >seq26 Length=124595110 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| |||||||| Sbjct 56223956 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 56223897 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 56223896 CTGAACGCCTCTAAGTCAGAATCC 56223873 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| |||||||| |||||||||||||| Sbjct 105819545 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 105819486 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 105819485 GTCAGAATCC 105819476 >seq9 Length=156508116 Score = 80.6 bits (88), Expect = 4e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || ||||||||||||||| |||||||| Sbjct 139338105 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGTCGAAGCTACCATCTGTGGGATTATGA 139338164 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 139338165 CTGAACGCCTCTAAGTCAGAATCC 139338188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819198357248