Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq34 379 6e-103 seq26 288 3e-75 seq22 279 2e-72 seq157 136 1e-29 seq33 136 1e-29 seq88 114 4e-23 >seq34 Length=94987271 Score = 379 bits (420), Expect = 6e-103 Identities = 420/563 (75%), Gaps = 64/563 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 39846925 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 39846866 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39846865 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 39846806 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 39846805 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 39846746 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 39846745 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 39846686 Query 242 AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------------------- 279 || | |||||| | | ||||| || ||||||| Sbjct 39846685 GGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCCC 39846626 Query 280 -----GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTTC 326 |||||| || || | ||||| |||| |||| |||||| ||| | | | Sbjct 39846625 CGGCCGGAGCCGGGAGGGAGCTCACCGGGTTGG-TTTTGATCTGATAAATGCACGCATCC 39846567 Query 327 C-------------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTAC 366 | |||| ||||| | ||||||||||||||||||||||| Sbjct 39846566 CCCCCCCCCCCCGGGAAG-GGGGGTCAGCGCCCGTGGGCATGTATTAGCTCTAGAATTAC 39846508 Query 367 CACGGTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||| |||||||| |||| | || | | | |||| ||| ||||||||||||||||| Sbjct 39846507 CACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAG 39846448 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 |||||||||||||||||||| | | ||||||||||||||||||||||||||||| Sbjct 39846447 CCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGA 39846388 Query 482 GACAAGCATATGACTACTGGCAG 504 |||||||||||| |||||||||| Sbjct 39846387 GACAAGCATATG-CTACTGGCAG 39846366 >seq26 Length=124595110 Score = 288 bits (318), Expect = 3e-75 Identities = 394/537 (73%), Gaps = 45/537 (8%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || ||| |||| ||||||| ||||| ||||||| ||||| Sbjct 113756879 ACTCATTCCAATTACAGGGCCTCAAGAGAGTCCTGTATTGTTATTTTTTGTCACAACCTC 113756820 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| |||||||| |||||||||||| | |||||||||||||||||| |||||||||| || Sbjct 113756819 CCCATGTCGGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGACGTGGTAGCCGGTT 113756760 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||||| |||| ||||||| |||| || | |||||| | | |||||||| Sbjct 113756759 CTCAGGCTCCCTCTCCAGAATGGAACCCTGATTCACCATCACCCGTGGTCAACATGGTAG 113756700 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 | || | | |||||| || || |||||||||| || |||| | || || | | Sbjct 113756699 G---CTCTACGACCATCTTAAATTAATAGGGCAGACGTTCAAATGGGTCGTCACCACCAC 113756643 Query 242 AAG-GCCATGCGA--TTCGTTAAGTTATTATGAATCACCAAGG-----AGC-CCCGAAG- 291 | | | || | || | | | ||||| || | ||||| | ||| ||| || Sbjct 113756642 AGGAGGCAAGAGATCTGCCCAAGGTTATCTGGAGTTACCAAAGCCCCCAGCACCCACAGC 113756583 Query 292 GGCGTTGGTTTTTTATCTAATAAATACA---------CCCCTTCCGAAGTCGGGG----- 337 | |||||||||| || |||||| || ||||| || | |||| Sbjct 113756582 CGGGTTGGTTTTT--ACTGATAAATGCACAGGCATCTCCCCTGCCCGGGATGGGGCAACA 113756525 Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAT----GTAGTAAGGTAC-- 391 | |||||| |||||||||||||| |||| ||||||||| | || | || | Sbjct 113756524 CCCTCAGCATGCATTAGCTCTAGAATGTCCACAGTTATCCATCCGAGCAGGAGGGGGCGA 113756465 Query 392 --TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAG-ATT 447 | |||| ||| |||||||||||||||||||||| ||||||||||||| || | Sbjct 113756464 GTGACCAAAAGAACCATAACTGATTTAATGAGCCATT--CAGTTTCACTGTACCAGCCGT 113756407 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || |||||| |||| |||||||||||||||||||||||||| | |||||||||| Sbjct 113756406 GC--GGACTTAGCCATGTATGGCTTAATCTTTGAGACAAGCATACG-CTACTGGCAG 113756353 Score = 114 bits (126), Expect = 4e-23 Identities = 92/110 (84%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 33 CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCT 92 ||||||| |||| | |||||||| |||| | ||| ||| |||||||||||| |||| Sbjct 124316856 CCTGTATTGTCATTTTTCGTCACTACTTCCCTGGGTCAGGAGTGGGTAATTTGCATGCCT 124316915 Query 93 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC-GGAA 141 ||||||||||||||| ||||||||| ||||||||| ||||| ||| |||| Sbjct 124316916 GCTGCCTTCCTTGGACGTGGTAGCCTTTTCTCAGGATCCCTTTCCTGGAA 124316965 >seq22 Length=149736546 Score = 279 bits (308), Expect = 2e-72 Identities = 204/236 (86%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 3201014 ACTCATTCCAATTACAGGGCCTCCAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 3200955 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3200954 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 3200895 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||| | | |||||||||| Sbjct 3200894 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCATGGTCACCATGGTAG 3200835 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 || |||||||||||||||||||||||||| || ||||| | |||||| Sbjct 3200834 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCG 3200779 >seq157 Length=176974 Score = 136 bits (150), Expect = 1e-29 Identities = 97/110 (88%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||||||||||||||||||||||| | | || Sbjct 103594 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTA 103653 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 103654 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 103702 >seq33 Length=98207768 Score = 136 bits (150), Expect = 1e-29 Identities = 97/110 (88%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||||||||||||||||||||||| | | || Sbjct 18533209 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTA 18533268 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 18533269 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 18533317 >seq88 Length=210641 Score = 114 bits (126), Expect = 4e-23 Identities = 92/110 (84%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 33 CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCT 92 ||||||| |||| | |||||||| |||| | ||| ||| |||||||||||| |||| Sbjct 48318 CCTGTATTGTCATTTTTCGTCACTACTTCCCTGGGTCAGGAGTGGGTAATTTGCATGCCT 48377 Query 93 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC-GGAA 141 ||||||||||||||| ||||||||| ||||||||| ||||| ||| |||| Sbjct 48378 GCTGCCTTCCTTGGACGTGGTAGCCTTTTCTCAGGATCCCTTTCCTGGAA 48427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510396873472