Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29]
207 sequences; 2,807,715,301 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq34 379 6e-103
seq26 288 3e-75
seq22 279 2e-72
seq157 136 1e-29
seq33 136 1e-29
seq88 114 4e-23
>seq34
Length=94987271
Score = 379 bits (420), Expect = 6e-103
Identities = 420/563 (75%), Gaps = 64/563 (11%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 39846925 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 39846866
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39846865 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 39846806
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 39846805 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 39846746
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| |||||||||||||||||||||||||| || ||||| | |||||| | |
Sbjct 39846745 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 39846686
Query 242 AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------------------- 279
|| | |||||| | | ||||| || |||||||
Sbjct 39846685 GGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCCC 39846626
Query 280 -----GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTTC 326
|||||| || || | ||||| |||| |||| |||||| ||| | | |
Sbjct 39846625 CGGCCGGAGCCGGGAGGGAGCTCACCGGGTTGG-TTTTGATCTGATAAATGCACGCATCC 39846567
Query 327 C-------------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTAC 366
| |||| ||||| | |||||||||||||||||||||||
Sbjct 39846566 CCCCCCCCCCCCGGGAAG-GGGGGTCAGCGCCCGTGGGCATGTATTAGCTCTAGAATTAC 39846508
Query 367 CACGGTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAG 421
||| |||||||| |||| | || | | | |||| ||| |||||||||||||||||
Sbjct 39846507 CACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAG 39846448
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
|||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 39846447 CCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGA 39846388
Query 482 GACAAGCATATGACTACTGGCAG 504
|||||||||||| ||||||||||
Sbjct 39846387 GACAAGCATATG-CTACTGGCAG 39846366
>seq26
Length=124595110
Score = 288 bits (318), Expect = 3e-75
Identities = 394/537 (73%), Gaps = 45/537 (8%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || ||| |||| ||||||| ||||| ||||||| |||||
Sbjct 113756879 ACTCATTCCAATTACAGGGCCTCAAGAGAGTCCTGTATTGTTATTTTTTGTCACAACCTC 113756820
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
||| |||||||| |||||||||||| | |||||||||||||||||| |||||||||| ||
Sbjct 113756819 CCCATGTCGGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGACGTGGTAGCCGGTT 113756760
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|||||||||||||||| |||| ||||||| |||| || | |||||| | | ||||||||
Sbjct 113756759 CTCAGGCTCCCTCTCCAGAATGGAACCCTGATTCACCATCACCCGTGGTCAACATGGTAG 113756700
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
| || | | |||||| || || |||||||||| || |||| | || || | |
Sbjct 113756699 G---CTCTACGACCATCTTAAATTAATAGGGCAGACGTTCAAATGGGTCGTCACCACCAC 113756643
Query 242 AAG-GCCATGCGA--TTCGTTAAGTTATTATGAATCACCAAGG-----AGC-CCCGAAG- 291
| | | || | || | | | ||||| || | ||||| | ||| ||| ||
Sbjct 113756642 AGGAGGCAAGAGATCTGCCCAAGGTTATCTGGAGTTACCAAAGCCCCCAGCACCCACAGC 113756583
Query 292 GGCGTTGGTTTTTTATCTAATAAATACA---------CCCCTTCCGAAGTCGGGG----- 337
| |||||||||| || |||||| || ||||| || | ||||
Sbjct 113756582 CGGGTTGGTTTTT--ACTGATAAATGCACAGGCATCTCCCCTGCCCGGGATGGGGCAACA 113756525
Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAT----GTAGTAAGGTAC-- 391
| |||||| |||||||||||||| |||| ||||||||| | || | || |
Sbjct 113756524 CCCTCAGCATGCATTAGCTCTAGAATGTCCACAGTTATCCATCCGAGCAGGAGGGGGCGA 113756465
Query 392 --TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAG-ATT 447
| |||| ||| |||||||||||||||||||||| ||||||||||||| || |
Sbjct 113756464 GTGACCAAAAGAACCATAACTGATTTAATGAGCCATT--CAGTTTCACTGTACCAGCCGT 113756407
Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|| |||||| |||| |||||||||||||||||||||||||| | ||||||||||
Sbjct 113756406 GC--GGACTTAGCCATGTATGGCTTAATCTTTGAGACAAGCATACG-CTACTGGCAG 113756353
Score = 114 bits (126), Expect = 4e-23
Identities = 92/110 (84%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 33 CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCT 92
||||||| |||| | |||||||| |||| | ||| ||| |||||||||||| ||||
Sbjct 124316856 CCTGTATTGTCATTTTTCGTCACTACTTCCCTGGGTCAGGAGTGGGTAATTTGCATGCCT 124316915
Query 93 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC-GGAA 141
||||||||||||||| ||||||||| ||||||||| ||||| ||| ||||
Sbjct 124316916 GCTGCCTTCCTTGGACGTGGTAGCCTTTTCTCAGGATCCCTTTCCTGGAA 124316965
>seq22
Length=149736546
Score = 279 bits (308), Expect = 2e-72
Identities = 204/236 (86%), Gaps = 1/236 (0%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 3201014 ACTCATTCCAATTACAGGGCCTCCAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 3200955
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3200954 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 3200895
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||| | | ||||||||||
Sbjct 3200894 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCATGGTCACCATGGTAG 3200835
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237
|| |||||||||||||||||||||||||| || ||||| | ||||||
Sbjct 3200834 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCG 3200779
>seq157
Length=176974
Score = 136 bits (150), Expect = 1e-29
Identities = 97/110 (88%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| ||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 103594 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTA 103653
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 103654 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 103702
>seq33
Length=98207768
Score = 136 bits (150), Expect = 1e-29
Identities = 97/110 (88%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| ||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 18533209 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTA 18533268
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 18533269 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 18533317
>seq88
Length=210641
Score = 114 bits (126), Expect = 4e-23
Identities = 92/110 (84%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 33 CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCT 92
||||||| |||| | |||||||| |||| | ||| ||| |||||||||||| ||||
Sbjct 48318 CCTGTATTGTCATTTTTCGTCACTACTTCCCTGGGTCAGGAGTGGGTAATTTGCATGCCT 48377
Query 93 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC-GGAA 141
||||||||||||||| ||||||||| ||||||||| ||||| ||| ||||
Sbjct 48378 GCTGCCTTCCTTGGACGTGGTAGCCTTTTCTCAGGATCCCTTTCCTGGAA 48427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510396873472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |