Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq30 156 3e-33 seq23 143 2e-29 seq32 102 6e-17 seq29 86.0 5e-12 >seq30 Length=120421639 Score = 156 bits (172), Expect = 3e-33 Identities = 558/861 (65%), Gaps = 26/861 (3%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 || || ||| ||||| ||||| ||| | ||||| || | || || || |||||| Sbjct 3353077 TTTCCAATCCAGTATCCTGATATCTGGAGAATGTATAAGCAAGCACGGGCATCTTTCTGG 3353136 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA---GCGTTTATCGAGC 61182 || | || ||||| || ||||| || || | | ||||| | || | ||| | Sbjct 3353137 ACAGGAGAAGAGGTTGACTTGTCAAAGAACCTCCCTCACTGGAACAAGCTTAAATC---C 3353193 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 | || | |||| || || | || || || ||||| || || || || || Sbjct 3353194 GACGAGAAGTATTTTATCTCCCACATCTTAGCCTTTTTTGCAGCCAGTGATGGAATTGTA 3353253 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||||| || || |||| ||||| |||||||| || || ||||| | | || ||| Sbjct 3353254 AATGAAAACTTGGTGGAGCGTTTTAGTCAGGAGGTCCAGGTTCCGGAGACTCACTGCTTC 3353313 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 || ||||| |||||| ||| |||||||| ||||| |||||||||||| | || || || Sbjct 3353314 TATGGCTTTCAGATTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTACTAATAGAC 3353373 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 || |||||||| || | | || | ||| || || || || || || || || || Sbjct 3353374 ACTTACATCAGAGATCCAAAGAAAAGGGAATTTTTATTTAACGCAATTGAAACAATGCCA 3353433 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAG-TACAACGGCTACATT 61481 || ||| ||||| || | ||| | ||||| | ||| || | |||| || Sbjct 3353434 TATGTTAAGAAAAAAGCAGACTAGGCTCTGCGCTGGAT-AGCAGATAGGAAATCTACTTT 3353492 Query 61482 TGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGC 61541 ||| ||| || || |||| ||||| | || || || | | ||| |||||| ||||| Sbjct 3353493 TGGGGAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGATCATTTGC 3353552 Query 61542 CGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTT 61601 ||||| || ||| | ||||| | || || ||||| || ||||| || ||||| | Sbjct 3353553 TGCAATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACT 3353612 Query 61602 GAT-ATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATC 61660 ||| | || | || || || | || ||||| ||||| ||| | | | | || Sbjct 3353613 GATCAGCA-GGGATGAAGGTCTTCACTGTGACTTTGC----CTGC----CTGATG-TTTC 3353662 Query 61661 TGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCG 61720 | || || || || || | ||| | || || || ||| || || || | Sbjct 3353663 AGTACAA---GCCTTCAGAAGACAGAGTGAGGGAAATCATTGCTGATGCTGTTCAAATTG 3353719 Query 61721 AACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAA 61780 | ||||| ||| | || || || ||||| || ||||| || ||||| |||| | | Sbjct 3353720 AGCAGGAGTTTTTAACAGAAGCCTTGCCTGTTGGCCTCATTGGAATGAACTGTGTTTTGA 3353779 Query 61781 TGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA--TTTGGGTATGAAGCG 61838 | ||||| ||||| ||||| || ||| | | | || || || | | | || Sbjct 3353780 CGAAACAGTACATTGAGTTTGTAGCTGACAGATTACTTGTAGAACTTGGATTCTCAA--A 3353837 Query 61839 GATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGAC 61898 ||| | | | | |||| || |||||||| ||||| | ||||| | || || || || Sbjct 3353838 GATTTTTCAGGCAGAAAATCCCTTTGATTTTATGGAGAACATTTCATTAGAAGGGAAAAC 3353897 Query 61899 GAATTTTTTCGAGAAACGTGT 61919 ||||| || |||||||| || Sbjct 3353898 AAATTTCTTTGAGAAACGAGT 3353918 >seq23 Length=145441459 Score = 143 bits (158), Expect = 2e-29 Identities = 579/898 (64%), Gaps = 28/898 (3%) Strand=Plus/Minus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 ||| ||||| | | ||| || | || ||||| || || | ||||| |||| ||||| Sbjct 104693235 AGAAAATCCCTGCCATTTTGTTGTCTTTCCCATTGAATACTATGATATCTGGCAGATGTA 104693176 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160 ||| || || || || ||||| ||||| | ||||||| || | ||||| | || | Sbjct 104693175 CAAGAAAGCTGAGGCCTCCTTTTGGACTGCCAAGGAGGTGGACCTTTCCAAGGGTATTCA 104693116 Query 61161 TGACTGGGA-GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCT 61219 ||||||| || | | | | ||| | |||| || || || |||| |||| Sbjct 104693115 ACACTGGGAAGCTCTGAAACTG-GATGAGAGATATTTTATAGCTCACGTTCTGGCTTTCT 104693057 Query 61220 TTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTG 61278 ||| || || || || |||||||| || || |||| || ||| || || || || Sbjct 104693056 TTGTAGCGAGTGATGGCATAGTCAATGAAAACTTGGTGGAGCGATTTAGC-CAAGAAGTT 104692998 Query 61279 CAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCG 61338 ||||| | ||||| || |||||||| |||||| | ||||||||||| || | ||||| Sbjct 104692997 CAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCTAAATTGCCATGGAAAACATACACTCT 104692938 Query 61339 GAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTG 61398 || ||||||||| || || || || ||||| | || |||| | ||| | Sbjct 104692937 GAAATGTACAGTCCCCTTATTGACACTTACATTAAAGATTCCAAGGAAAGAGAATATCTC 104692878 Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 |||||||| || | || || || |||||| ||| || || |||||||| |||| Sbjct 104692877 TTCAATGCTATTTAAACAATGCCTTGTGTGAAGAAGAAGGCTGACTGGGCCTTGCGTTGG 104692818 Query 61459 ATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 | | |||| | | ||| ||| ||| || | |||| ||||| ||||| || | Sbjct 104692817 A--CTGGGGACAAAGAGTCCCCATATGGAGAATGAGTTGTGGCCTTTGCTGTGGTGGAAG 104692760 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | || || || || |||| || || ||| | ||||| || |||| |||| Sbjct 104692759 GAGTCTTCTT---TGCATCG---------ATATTCTGGCTCAAGAATCGCAGACTGATGC 104692712 Query 61577 CCGGTCTGACCTTCAGCAATGAG-TTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 | ||||| || | ||||||| || || || | ||| |||| | || || || | | Sbjct 104692711 CGGGTCTTACACTTTCCAATGAGCTTATTAGCA-GAGACAAGGGTTTACACTGGGACTCT 104692653 Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 || || | ||||| | | ||||| | || | |||| | | || || Sbjct 104692652 GCCTGCCTGATGTTCAAGC---ACCTGGTACACAAGCCATTGGAGCAAAGAGTAAAAGAT 104692596 Query 61696 ATTGTTC-GTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTC 61754 || | | | || | || | ||||| ||||| | || |||||||| || Sbjct 104692595 ATAAAACACCAACACTGTTAGGATAGGGCAGGAGTTTCTCATGGAGGCTTTGCCTGTGAA 104692536 Query 61755 ACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 ||| |||| ||||| | ||| |||||| ||||||||| | || ||| | || Sbjct 104692535 GCTCTTCGGGGCAAATTGCACTTTGATGAAGCAGTACATTGAATTTTTGGCTGACAGGCT 104692476 Query 61815 GTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGA-AAAACCCATTTGATTTCATGG 61873 | || ||||| | ||| ||| | | | | | |||| |||||||| |||| || Sbjct 104692475 TCCACTGGAGCTGGGTGTTAAGAAGAT-TTTCAGAGTAGAAAATCCATTTGACTTCACGG 104692417 Query 61874 ACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | | ||||| || || || || || | || || ||||| | |||||||| ||||| Sbjct 104692416 AAAATATTTCACTAGAAGGAAAAACAGACTTCTTTGAGAAGCAAGTAGGCGAGTATCA 104692359 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| || ||||| || ||||| ||||| |||| ||||| || Sbjct 102459578 GGTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 102459519 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || || || | ||| ||||| | |||||| || || |||||||| || Sbjct 102459518 GTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCGGTCTCCGTCTG 102459459 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||||||||||||| | |||||| Sbjct 102459458 GGACTCAATGATGGCATACCAAAG 102459435 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || ||||||||||||||||||| || || || | Sbjct 102457292 CATGAAGAGATCTGGGATCCAAAGTGCAAAGAAGAGATCGCGTGCTCGCTGTTCTTCCTT 102457233 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||| ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 102457232 GCCTGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 102457174 Query 66459 AGATGGCGAACGAGCC 66474 | || || |||| ||| Sbjct 102457173 AAATAGCAAACGCGCC 102457158 >seq32 Length=104043685 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| ||||| ||||||||||| || | ||||| || || ||||| ||||| |||| Sbjct 37945171 TGGAGCGTTTTAGTCAGGAGGTGCAGGTTCCAGAGGCTCGCTGCTTCTATGGCTTTCAGA 37945112 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| ||||| |||||||||||| | || || || || |||||||| | Sbjct 37945111 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCAGAG 37945052 Query 61376 A 61376 | Sbjct 37945051 A 37945051 >seq29 Length=120129022 Score = 86.0 bits (94), Expect = 5e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || || || || ||||| | ||||| || |||||||| |||||||| Sbjct 24710358 TGGAGCGATTTAGC-CAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAA 24710416 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||||||||||| || | ||||| || ||||||||| | || || || || ||||| Sbjct 24710417 ATTGCCATGGAAAACATACACTCTGAAATGTACAGTCTCCTTATTGACACTTACAT 24710472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566997010480