Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq9 143 4e-32 seq11 118 2e-24 seq19 89.7 8e-16 >seq9 Length=107150856 Score = 143 bits (158), Expect = 4e-32 Identities = 163/217 (75%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||| | |||||| | Sbjct 42020760 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTANTGGGAATT-C 42020817 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| || | | || ||||||||| | |||||||||| || ||||| | Sbjct 42020818 CTCNTTCATGGGGAATAATTGCAATCCCCGATCCCCATCATGAATGGGGTTCAATGG--- 42020874 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | ||||| |||| ||| | || || |||| ||||||||| |||||||| | Sbjct 42020875 ---GCACCTGCCGGCGTAGGGTAGGCACACGCTGAACCAGTCAGTGTAGTGCGCGTGCAG 42020931 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| | ||||||||||||||||||||||||||||||| Sbjct 42020932 CCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC 42020968 >seq11 Length=111406228 Score = 118 bits (130), Expect = 2e-24 Identities = 171/236 (72%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 ||||||||||| || || |||| || ||||| ||||| || |||||| |||||| |||| Sbjct 54954797 CAAAGGGCAGGAACTTAATCAATGCAAGCTT-ATGACCTGCACTTACTGGGAATT-CCTC 54954854 Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG-AT 118 || | | || ||||||||| ||| ||||||| |||| ||||| | || Sbjct 54954855 NTTCATGGGGAATAATTGCAATCCCTGATCTCCATCAC----AAATGGGGTTCAACGGAT 54954910 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| |||| ||| ||| || || ||| ||||||||| |||| || Sbjct 54954911 TACCCGCGCCTGCTGGCGTAGGGTGGGCACACGCTGAGCCAGTCAGTGTAGTGCGCATGT 54954970 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCC 234 |||| | ||||||||||||||||||||||||||||| ||||| ||| ||| || Sbjct 54954971 AGCCCTGGACATCTAAGGGCATCACAGACCTGTTATT-ACTCAATCTTGGGTGACC 54955025 >seq19 Length=82564344 Score = 89.7 bits (98), Expect = 8e-16 Identities = 83/103 (81%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||| || |||| |||||||| ||||| ||| |||||| |||| ||| Sbjct 10233902 GTACAAAGGGCAAGGACTTAATCAAAGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 10233959 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||| | | || || |||||| | ||||||||||||| Sbjct 10233960 CTCGTTCATGGGGAATAANTGCAATCCCCGATCCCCATCACGA 10234002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751981197415