Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq10 123 1e-25 seq351 116 2e-23 seq28 116 2e-23 seq1234 104 1e-19 seq21 96.9 1e-17 seq22 91.5 6e-16 seq27 86.0 3e-14 seq15 86.0 3e-14 seq2014 82.4 3e-13 seq12 82.4 3e-13 seq4 75.2 5e-11 >seq10 Length=113323912 Score = 123 bits (136), Expect = 1e-25 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||||| |||| ||||| |||||||||||||||||||||| |||| |||| Sbjct 51110496 GAGCATGAGCATATGTGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 51110555 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | || || ||| | |||||||| | ||| | Sbjct 51110556 CCAGAGGAAACTCTGGTGGAGGTCTGTAGTAGTCCTGACCTGCAAATCAGTGGTCTGACC 51110615 Query 669 TGGGTATAGGGGC 681 ||||||||||||| Sbjct 51110616 TGGGTATAGGGGC 51110628 >seq351 Length=10747 Score = 116 bits (128), Expect = 2e-23 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || |||||||| | ||||| ||||||| Sbjct 9239 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAATTCCATCTAAGGCTAAAT 9180 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 9179 ACCGGCAGGAGACCGATATTCAACAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGAAG 9120 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 |||||| | || || ||||||| ||||| ||| Sbjct 9119 AGAGAGCTCAAGAGGGCGTGAAACCGTTGAGAGG 9086 >seq28 Length=148379591 Score = 116 bits (128), Expect = 2e-23 Identities = 97/116 (84%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 549 GAGTAAGAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||| | ||||||| ||| || |||||||||| ||||||||||||||||| |||| ||| Sbjct 72958443 GAGCACGAGCATACGCT-TTAGGACCCGAAATATGGTGAACTATGCCTGGGCAGGGCGAA 72958501 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||||||||||||||||||||| | |||||| ||| ||| |||||| ||||| Sbjct 72958502 GCCAGAGGAAACTCTGGTGGAGGTCCATAGCGGTCCTGACGTACAAATCAGTCGTC 72958557 >seq1234 Length=31474 Score = 104 bits (114), Expect = 1e-19 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||| |||||||||||||||||||||||||||| |||| ||| Sbjct 6738 GAGCACGAGCGTACGCGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCCAAG 6797 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660 |||||||||||||||||| ||| | || ||| ||| | ||||||||| || Sbjct 6798 CCAGAGGAAACTCTGGTGAAGGTCCATAGTGGTCCTGACATGCAAATCGGTC 6849 >seq21 Length=68186955 Score = 96.9 bits (106), Expect = 1e-17 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| ||||||| |||| ||||||||| |||| |||||||||||||||||||||| | Sbjct 18336323 GGACCAGAAAGATAGTGAGCTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGAA 18336382 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || || || ||| | | |||||||||||| | | ||| ||||||||| Sbjct 18336383 GGTCCGTAGGGGTCCCAACTTGCAAATCGATCCTTCTACCTGGATATAGGGGC 18336435 >seq22 Length=59539374 Score = 91.5 bits (100), Expect = 6e-16 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 |||| |||||||||||||||||||||||||| || || ||| ||| ||||||||||| | Sbjct 22847397 AGGGNGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGTGGTCCTGACGTGCAAATCGGT 22847338 Query 660 CGTCAAATTTGGGTATAGGGGC 681 |||| | |||||||||| || Sbjct 22847337 CGTCTGACCTGGGTATAGGCGC 22847316 >seq27 Length=41896614 Score = 86.0 bits (94), Expect = 3e-14 Identities = 88/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATG----CCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||| ||||||||||||| |||| |||| |||| ||||||||||| ||| |||| Sbjct 33248747 GGACCGGAAAGATGGTGAATTATGTATGCCTGGGCAGGGCGAAGCCAGAGGGAACGCTGG 33248688 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 |||||| || || ||| ||| || |||| | ||||| || ||||||| ||| Sbjct 33248687 TGGAGGTTCATAGTGGTCCTGATGTACAAACTGGTCGTCCAACCTGGGTATGGGG 33248633 >seq15 Length=89017189 Score = 86.0 bits (94), Expect = 3e-14 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 |||| ||||| | |||| ||||||||||||||| || || |||||| | | |||||| Sbjct 2568686 CTTCCCCGAGTTGGGTTGCTTGGGAATGCAGCTCAAAGCCGGTGGTAAACTCCATCTAAA 2568745 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 ||| |||| | || || ||| || | ||||||| | | | ||||| ||| ||| || Sbjct 2568746 GCTGAATACTAGCATGAAACCAATGGTCAACAAGTACAATAAGGGAAAGTTGAGAAGAAC 2568805 Query 153 TTTGGAAAGAGAGTTAAAAA 172 | | |||||||| ||| || Sbjct 2568806 TATAAAAAGAGAGCTAATAA 2568825 >seq2014 Length=18058 Score = 82.4 bits (90), Expect = 3e-13 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||||| ||||||||||||| ||| ||| |||| |||||||||||||||||||| Sbjct 10038 TTAGGACCTGAAAGATGGTGAAGTATTCCTAGGAAGGGCAAAGCCAGAGGAAACTCTGGT 9979 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||| | ||| || || | || |||||||| ||| Sbjct 9978 GGAGGTCCTTAGCAGTCTTGACATGAAAATCGATTGTC 9941 >seq12 Length=92399829 Score = 82.4 bits (90), Expect = 3e-13 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||||| ||||||| |||| ||||||| |||| |||||||||||||||||||| Sbjct 17382673 TTAGGACCTGAAAGATTGTGAGATATGCCTAGGAAGGGCAAAGCCAGAGGAAACTCTGGT 17382614 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||| || ||| || || | ||||||||||| ||| Sbjct 17382613 GGAGATTCTTAGCAGTCTTGCCATGCAAATCGATTGTC 17382576 >seq4 Length=164141553 Score = 75.2 bits (82), Expect = 5e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 ||||||||| |||| |||||||||||||||||||||||||| | || ||| ||| Sbjct 1787504 CTATGCCTGGCCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCATAGGGGTCCTGAG 1787563 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | |||| || || || | ||||||||| ||||| Sbjct 1787564 GGGCAAGCCGGTCATCTGACCTGGGTATAGAGGCGA 1787599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079944637550