Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28]
2,581 sequences; 2,475,012,951 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq12 132 8e-29
seq9 104 4e-20
seq2014 93.3 7e-17
seq11 77.0 5e-12
seq4 75.2 2e-11
>seq12
Length=92399829
Score = 132 bits (146), Expect = 8e-29
Identities = 90/100 (90%), Gaps = 1/100 (1%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| || |||||| |||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 62922387 GTCTCATTTGTTATCAGAATTAACCAGACAAATCGGTCCACCAACTAAGAATGGCCATGC 62922328
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||| |||| |||||||||||||||||||||
Sbjct 62922327 ACCACCACCCACGGAAT-GAGAAAGAGCTATCAATCTGTC 62922289
>seq9
Length=107150856
Score = 104 bits (114), Expect = 4e-20
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||| |||||||| |||| | |||||||||||||||||||||||||||||| ||
Sbjct 42020911 GTCAGTGTAGTGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 42020969
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
|| | || || ||| | |||| | ||||||||||||||
Sbjct 42020970 CAGTC-TCAGGTGACTGAATGCCATTTGTCCCTCTAAGAAG 42021009
>seq2014
Length=18058
Score = 93.3 bits (102), Expect = 7e-17
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217
|||||| ||| | ||| |||||||||| | |||| ||||||||||||||||| | |||||
Sbjct 11407 GGTCTCATTCCTCATCAGAATTAACCAAAGAAATTACTCCACCAACTAAGAATGACCATG 11466
Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||||| | ||| || ||||||||||| ||||
Sbjct 11467 AACCACCGTCTGTAGTATTGAGAAAGAGCTAACAAT 11502
>seq11
Length=111406228
Score = 77.0 bits (84), Expect = 5e-12
Identities = 58/67 (87%), Gaps = 1/67 (1%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||| |||| || |||| | ||||||||||||||||||||||||||||| ||
Sbjct 54954952 GTCAGTGTAGTGCGCATGTAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATT-ACT 54955010
Query 75 CAAACTT 81
||| |||
Sbjct 54955011 CAATCTT 54955017
>seq4
Length=164141553
Score = 75.2 bits (82), Expect = 2e-11
Identities = 61/74 (82%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205
|||||| | || ||||| || |||||| |||||||||||||||| |||| || || |||
Sbjct 56994667 TTAGCATGCCAAAGTCTCATTTGTTATCAGAATTAACCAGACAAACCACTTCATCAGCTA 56994726
Query 206 AGAACGGCCATGCA 219
|||| |||||| ||
Sbjct 56994727 AGAATGGCCATACA 56994740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796780077261
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |