Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq12 132 8e-29 seq9 104 4e-20 seq2014 93.3 7e-17 seq11 77.0 5e-12 seq4 75.2 2e-11 >seq12 Length=92399829 Score = 132 bits (146), Expect = 8e-29 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| || |||||| |||||||||||||||||| ||||||||||||||| |||||||| Sbjct 62922387 GTCTCATTTGTTATCAGAATTAACCAGACAAATCGGTCCACCAACTAAGAATGGCCATGC 62922328 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||| ||||||||||||||||||||| Sbjct 62922327 ACCACCACCCACGGAAT-GAGAAAGAGCTATCAATCTGTC 62922289 >seq9 Length=107150856 Score = 104 bits (114), Expect = 4e-20 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| |||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 42020911 GTCAGTGTAGTGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 42020969 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 || | || || ||| | |||| | |||||||||||||| Sbjct 42020970 CAGTC-TCAGGTGACTGAATGCCATTTGTCCCTCTAAGAAG 42021009 >seq2014 Length=18058 Score = 93.3 bits (102), Expect = 7e-17 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 |||||| ||| | ||| |||||||||| | |||| ||||||||||||||||| | ||||| Sbjct 11407 GGTCTCATTCCTCATCAGAATTAACCAAAGAAATTACTCCACCAACTAAGAATGACCATG 11466 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||| | ||| || ||||||||||| |||| Sbjct 11467 AACCACCGTCTGTAGTATTGAGAAAGAGCTAACAAT 11502 >seq11 Length=111406228 Score = 77.0 bits (84), Expect = 5e-12 Identities = 58/67 (87%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| |||| || |||| | ||||||||||||||||||||||||||||| || Sbjct 54954952 GTCAGTGTAGTGCGCATGTAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATT-ACT 54955010 Query 75 CAAACTT 81 ||| ||| Sbjct 54955011 CAATCTT 54955017 >seq4 Length=164141553 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | || ||||| || |||||| |||||||||||||||| |||| || || ||| Sbjct 56994667 TTAGCATGCCAAAGTCTCATTTGTTATCAGAATTAACCAGACAAACCACTTCATCAGCTA 56994726 Query 206 AGAACGGCCATGCA 219 |||| |||||| || Sbjct 56994727 AGAATGGCCATACA 56994740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796780077261