Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq24 284 2e-74 seq13 224 2e-56 seq4 165 1e-38 seq20 143 5e-32 seq25 122 1e-25 seq8 114 2e-23 >seq24 Length=52117086 Score = 284 bits (314), Expect = 2e-74 Identities = 175/187 (94%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 48 CTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATC 107 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35202084 CTAATCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATC 35202025 Query 108 CAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 35202024 CAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 35201965 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 35201964 GCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 35201905 Query 228 GCACCTC 234 ||| || Sbjct 35201904 ACACTTC 35201898 >seq13 Length=116904986 Score = 224 bits (248), Expect = 2e-56 Identities = 162/185 (88%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 75070362 CCTGTCTCATGATGGTCTAAACCCAGCTCA-GTTCCCTATGAGTGGGTGAACAATCCAAC 75070304 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| | Sbjct 75070303 GCTTGGTAAATTCTGATTCACAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGTGA 75070244 Query 172 CGTCGCTATGAAC--GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGC 229 || ||||||| | |||||||||||||||||||| |||| ||||||||||||||||| | Sbjct 75070243 GGTGGCTATGAGCGTGCTTGGCTGCCACAAGCCAGGTATCTCTGTGGTAACTTTTCTGAC 75070184 Query 230 ACCTC 234 | ||| Sbjct 75070183 AACTC 75070179 >seq4 Length=164141553 Score = 165 bits (182), Expect = 1e-38 Identities = 97/101 (96%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 7341945 ATGATAGGAAGAGCTGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCG 7342004 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||||||||||||||||||||| |||||| Sbjct 7342005 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 7342045 >seq20 Length=69342659 Score = 143 bits (158), Expect = 5e-32 Identities = 136/172 (79%), Gaps = 14/172 (8%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||||||||||||| |||||||||||| |||||| |||| ||||||| Sbjct 47645309 GTCTAAACCCAGCTCA--TTCCCTATTAGTTGGTGAAT--------GCTTGGTGAATTCT 47645358 Query 126 GCTTCGGTAT---GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 ||||| | || ||||||| || |||||| |||||||||||||||| ||||||||| Sbjct 47645359 GCTTCAGAATTCTGATAGGA-GAATTGACATCAAAGGATCAAAAAGCAATGTCGCTATGG 47645417 Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 | ||| || |||| |||||| ||||||||||| |||||||||| |||||| Sbjct 47645418 GCACTTAGCCACCACTAGCCAGCTATCCCTGTGGCAACTTTTCTGACACCTC 47645469 >seq25 Length=55716805 Score = 122 bits (134), Expect = 1e-25 Identities = 116/146 (79%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||| |||||||||||| | | || ||||||||| ||| ||||||||||||||||||| Sbjct 17885514 GACATTGAAGGATCAAAAGACGAAGTGGCTATGAACACTTAGCTGCCACAAGCCAGTTAT 17885455 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC--GA 266 ||||||||||||||||||| ||||| || | | | | || | ||||||| || Sbjct 17885454 CCCTGTGGTAACTTTTCTGACACCTTCTGCTTAACACCGAAAAGGTCAGAAGGATCCTGA 17885395 Query 267 TAGGCCACACTTTCATGGTTTGTATT 292 || || | ||||||||||||||||| Sbjct 17885394 -AGCCCCCGCTTTCATGGTTTGTATT 17885370 >seq8 Length=167013402 Score = 114 bits (126), Expect = 2e-23 Identities = 136/181 (75%), Gaps = 10/181 (6%) Strand=Plus/Minus Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA------AGGATCAAAAAGCAA--CG 173 ||||||||| |||||||||||||| ||||| || |||||||||| | || Sbjct 44841918 TTCTGCTTCAA-ATGATAGGAAGAGCTGACATTGACATCAAAGGATCAAAAGTGACTTCG 44841860 Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 | ||||||| | ||||||||||||||| || ||||| ||||||||||||||||| ||||| Sbjct 44841859 TTGCTATGAGCACTTGGCTGCCACAAGTCAATTATCTCTGTGGTAACTTTTCTGACACCT 44841800 Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | || | ||| | || |||| ||| ||| | ||||||||| || ||||||| Sbjct 44841799 CCTGCTTAAAACCCAAAAGGTTAAAAGTATCATGAGGTCGCACTTTCAT-GTCTGTATTC 44841741 Query 294 A 294 | Sbjct 44841740 A 44841740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854377947936