Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq9 159 7e-37 seq11 136 7e-30 seq19 114 2e-23 seq812 77.0 6e-12 >seq9 Length=107150856 Score = 159 bits (176), Expect = 7e-37 Identities = 193/259 (75%), Gaps = 12/259 (5%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| | ||| ||| | || || |||| ||||||||||||||| Sbjct 42021009 CTTCTTAGAGGGACAAATGGCATTCAGTCACCTG--AGACTGAG-CAATAACAGGTCTGT 42020953 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||| |||||||| |||||||||| | || || || | | Sbjct 42020952 GATGCCCTTAGATGTCCAGGGCTGCACGCGCACTACACTGACTGGTTCAGCGTGTGCCTA 42020893 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||||| |||| | || | || | | || || ||||||| | | ||| Sbjct 42020892 CCCTACGCCGGCAGGT---GCCCAT----TGAACCCCATTCATGATGGGGATCGGGGATT 42020840 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | || ||||||| || | |||| ||| ||||| ||| |||||||| Sbjct 42020839 GCAATTATTCCCCATGAANGAGGAATTCCCANTAAGTGCGGGTCATAAGCTTGCGTTGAT 42020780 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 42020779 TAAGTCCCTGCCCTTTGTA 42020761 >seq11 Length=111406228 Score = 136 bits (150), Expect = 7e-30 Identities = 164/222 (74%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||| ||||| ||||||||||||||||||||||||||||| | |||| || |||| ||| Sbjct 54955017 AAGATTGAGT-AATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTACATGCGCACTA 54954959 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 ||||||| | || || || | ||| ||| | ||| |||||||| | || | Sbjct 54954958 CACTGACTGGCTCAGCGTGTGCCCACCCTACGCCAGCAGGCGCGGGTAATCCGTTGAACC 54954899 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 | | ||| ||| ||| | |||||||||||| | | | || ||||||| || ||||| Sbjct 54954898 CCATTTGTGATGGAGATCAGGGATTGCAATTATTCCCCATGAANGAGGAATTCCCAGTAA 54954839 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326 | || ||||| ||| || ||||||| || ||||||||||| Sbjct 54954838 GTGCAGGTCATAAGCTTGCATTGATTAAGTTCCTGCCCTTTG 54954797 >seq19 Length=82564344 Score = 114 bits (126), Expect = 2e-23 Identities = 134/181 (74%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 148 GGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCT 207 |||| ||||||| ||||||||| | ||| | || | | ||| ||| ||| | Sbjct 10234080 GGGCAGCACGCGTGCTACACTGGCTCAGCG---GTGTGCCTACCCTATAACGGCAGGCAT 10234024 Query 208 GGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 |||||| || | || | | ||||| ||||||| | | |||||| ||||| | | | || Sbjct 10234023 GGGTAACCTGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCANTTATTCCCCATGAA 10233964 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 |||||||| || |||||| ||| ||||| ||| ||| ||||||| |||| |||||||||| Sbjct 10233963 CGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCTTTGATTAAGTCCTTGCCCTTTGT 10233904 Query 328 A 328 | Sbjct 10233903 A 10233903 >seq812 Length=49192 Score = 77.0 bits (84), Expect = 6e-12 Identities = 74/94 (79%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 ||||||| | | ||| |||||||| | | ||| || ||| || |||||| ||| ||| Sbjct 5114 TGGGGATTGGGGATTACAATTATTCCCCAG-AACAAGAAATTCCCAGTAAGTGCGGTTCA 5172 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| |||||||||| |||||||||||||||| Sbjct 5173 TAAGCTTGCGTTGATTANGTCCCTGCCCTTTGTA 5206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947175552768