Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq13 208 2e-51 seq12 194 5e-47 seq692 134 4e-29 seq6 89.7 2e-15 >seq13 Length=116904986 Score = 208 bits (230), Expect = 2e-51 Identities = 184/225 (82%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| ||||||| ||||| Sbjct 107016518 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTT-TTGTCACAACCTC 107016460 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||| ||| |||||||||||| | ||||||||||||||||||||||||| ||| || Sbjct 107016459 CCCAAGTCAGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGATGTGGTAACCGGTT 107016400 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||||| |||| ||||||| ||||||| | |||||| | | |||||| | Sbjct 107016399 CTCAGGCTCCCTCTCCAGAATTGAACCCTGATTCCCCATCACCCGTGGTCAACATGGT-G 107016341 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 | | |||| |||||| || || |||| ||||| ||| |||| Sbjct 107016340 GGCTCTAT--GACCATCTTAAATTAATAGTGCAGACATTCAAATG 107016298 Score = 123 bits (136), Expect = 8e-26 Identities = 131/168 (78%), Gaps = 11/168 (7%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT-----ATCAA 397 ||||||||||| ||||||||| |||| |||||| | || | | | | ||| Sbjct 107016131 AGCATGTATTAACTCTAGAATGACCA--GTTATCGGAGCAGGAGAGAAGCGGGTGACCAA 107016074 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 | ||| ||||||||||||||||||||||| |||||||||||| | |||||| Sbjct 107016073 AGGAACCATAACTGATTTAATGAGCCATTC--AGTTTCACTGTACCAGCCGTACATACTT 107016016 Query 458 A-GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 107016015 AAGACATGTATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 107015969 >seq12 Length=92399829 Score = 194 bits (214), Expect = 5e-47 Identities = 378/549 (69%), Gaps = 57/549 (10%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||||||| |||| || | | |||||| ||||||| ||||| ||||||||||| Sbjct 17377152 ACTCATTCCAACTACAGAGCCTCGAAAGAGTCCTGTATTGTTATTTTCCGTCACTACCTC 17377211 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC-CGTT 120 || | ||| ||| ||| ||| |||| |||||||| ||||||||||||||||||| ||| Sbjct 17377212 CCTGGGTCAGGAGTGGATAACTTGCATGCCTGCTGTCTTCCTTGGATGTGGTAGCTGGTT 17377271 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 | |||||| || ||| ||||| ||||||| | ||||| | || | | || || || Sbjct 17377272 TTTCAGGCACCATCTGTGGAATTGAACCCTGACTCCCCATCACTGATGGTCACAATTTTA 17377331 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC------- 233 ||| |||||||| ||||||||||||||||| ||||||||| |||| Sbjct 17377332 GGCATGGGGACTACCATCCAAAGTTGATAGGGCAGACATTTGAATGGTTCATCTATACTA 17377391 Query 234 --GCCG--GCTCAAGGCCATGC------GATTCGTTAAGT---------TATTATGAATC 274 || | | ||| | | || || || || | ||| | ||| Sbjct 17377392 CAGCAGATGTGCAATCCTAAGCCACCTAGAGTCACCAAATCCACCAGCATATGCTCAATG 17377451 Query 275 ACCAAGGAGCCCCGAAGG----GCGTTGGTT--TTTTATCTAATAAAT--ACACCCCTTC 326 |||| |||| || || | ||||| | | |||| |||||| |||| | | Sbjct 17377452 ACCA--GAGCAGGGAGGGAACTTCCCTGGTTGATCTGATCTGATAAATGCACACATCCAC 17377509 Query 327 CGAAGTCGG--GGTTTTTAGCAT------GTATTAGCTCTAGAATTACCACGGTTATCCA 378 | || || ||| | ||| ||||||||||||| | ||| || |||||||| Sbjct 17377510 CTGAGGAGGAAGGTCAACACCATCTGCATGTATTAGCTCTAGTAATACTACAGTTATCCA 17377569 Query 379 TGTAGTA----AGGTACT-ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTT 433 |||| | || ||| |||||| ||| |||||||| ||||||||||||| |||||| Sbjct 17377570 AGTAGGAGAGGAGCGACTGATCAAAGGAACCATAACTGACTTAATGAGCCATTTGCAGTT 17377629 Query 434 TCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||| | || || ||| ||||| || |||||||||||||||||||||||||| Sbjct 17377630 GCACTACACCAGTATG----TACGTAGACTTGTATGGCTTAATCTTTGAGACAAGCATA- 17377684 Query 493 GACTACTGG 501 |||||||| Sbjct 17377685 CACTACTGG 17377693 >seq692 Length=65703 Score = 134 bits (148), Expect = 4e-29 Identities = 163/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||| |||||||||||| | || |||||| ||||| | || ||||| ||| ||| | Sbjct 52302 ACTTATTCCAATTACAGGGCCTTGAAAGAGTCCTGTTTT-GT-TTTATCATCAGTACTGC 52359 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| || ||| ||| ||| ||| | ||||| || ||| |||||| | |||||| ||| Sbjct 52360 CCCAAGTTGGGTATGGATAAATTGTGTGCCTGAGGCATTCTTTGGATATAGTAGCCATTT 52419 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||| |||||||| ||||| |||| | ||||||| | |||| | | |||||| || Sbjct 52420 CTCAGCTACCCTCTCCAGAATCAAACCTTGATTCCCCATCACCCATCGTCACCATGACAG 52479 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAAT 219 || | ||||||||||||||||||||| |||| || Sbjct 52480 GCATGGAGACTACCATCGAAAGTTGATAGGACAGATAT 52517 Score = 123 bits (136), Expect = 8e-26 Identities = 110/138 (80%), Gaps = 5/138 (4%) Strand=Plus/Plus Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAATAAACGATAACTGAT 413 ||||||||||| ||||| || |||| | | | | | |||| ||| ||||||||| Sbjct 52685 AGAATTACCACAGTTATACAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGAT 52744 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTA 473 |||||||||||||||||||||||||||| | | ||||||||||||||||||||| Sbjct 52745 TTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTA 52804 Query 474 ATCTTTGAGACAAGCATA 491 ||||||||| ||| |||| Sbjct 52805 ATCTTTGAGGCAATCATA 52822 >seq6 Length=146485248 Score = 89.7 bits (98), Expect = 2e-15 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||| ||| ||||||||||| || |||| | |||||| || || |||| ||||||| Sbjct 28386 GTCAGGAGTGGGTAATTTGTGCACCTGTAGATTTCCTTTAATTTGATAGCATTTTCTCAA 28445 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186 | |||||| | || ||||||| || || || |||| | | ||||||||||| | Sbjct 28446 GACCCCTCTTCTTAACTGAACCCTGTTTTCCTGTCACCCATGGTCACCATGGTAGGTAAG 28505 Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 | |||||| ||||||| ||||| |||| | | ||||| |||| Sbjct 28506 TTGTCTACCACTGAAAGTTAATAGGACAGACAGTCAAATGAGTCATC 28552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510361016576