Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1997 149 5e-31 seq9 136 3e-27 seq1 107 2e-18 seq21 102 6e-17 >seq1997 Length=85722 Score = 149 bits (164), Expect = 5e-31 Identities = 414/623 (66%), Gaps = 13/623 (2%) Strand=Plus/Minus Query 61024 AATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAG 61083 ||||| || || || ||| |||||||| || ||| | | || ||||| || || | Sbjct 34280 AATGAGCCATTACTGAGAGAAAATCCTCGCCGCTTCCTTGTCTTTCCCATTGAATACCAT 34221 Query 61084 GATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGAT 61143 ||||| ||| |||||||| || || || | ||||| ||||| | |||||||| || Sbjct 34220 GATATCAGGCAAATGTACAAGAAAGCTGAGACCTCCTTTTGGACTGCCGAGGAGGTGGAC 34161 Query 61144 TTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGG-TGAACAACATTTCATTAA 61202 | ||||| | || | ||||| | | | | | | | ||| |||| | || Sbjct 34160 ATTTCCAAGGCTATTCAACACTGGAAA-GATCAGAAACCCGATGAGAGACATCTTATATC 34102 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || |||| || ||||| | || || |||||||| || || |||| || Sbjct 34101 TCACGTTCTGGCTTT-TTTGCAATGAGTGGTGGCATAGTCAATGAAAACTTGGTGGAGCG 34043 Query 61263 -TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || || || || ||||| | ||||| || |||||||| |||||||| ||||||| Sbjct 34042 ATTTAGC-CAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCA 33984 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| || |||| || ||||||||| | || || || || ||||| | || | Sbjct 33983 TGGAGAACGTATACTCTGAAATGTACAGTCTCCTTATGGACACTTACATTAAAGATCCCA 33924 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 |||| | ||| | |||||||| || | || || || |||||| ||| || | Sbjct 33923 AGGAAAGAGAATATCTCTTCAATGCTATTTAAACAATGCCTTGTGTGAAGAAGAAGGCTG 33864 Query 61442 ATTGGGCCTTCAATTGGAT----CACCAGTACAA-CGGCTACATTTGGTGAACGATTGCT 61496 | |||||||| |||||| || || | || || ||| |||| ||| || | | Sbjct 33863 ACTGGGCCTTGTGTTGGATTGGGGACAAGGAGAATTGGGGACA-TTGGAGAATGAGTTGT 33805 Query 61497 GGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAAT-CTTTTGGT 61555 || ||||| |||| || | | || || ||| || ||||| | || | ||| Sbjct 33804 GGTCTTTGCCATGGTGGAAAGAATCTTCTTTTCTGGTTCTTTTGCATCGATAACTCTGGC 33745 Query 61556 TGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG-TTGATATCACGCGAC 61614 | ||||| || | || ||||| || || || || ||||||| || || || | ||| Sbjct 33744 TCAAGAATCGCAGTCTGATGCCAGGCCTTACATTTTCCAATGAGCTTATTAGCAAGAGAC 33685 Query 61615 GAGGGCATGCATTGTGATTTTGC 61637 ||||| | || || || ||||| Sbjct 33684 GAGGGTTTACACTGGGACTTTGC 33662 >seq9 Length=107150856 Score = 136 bits (150), Expect = 3e-27 Identities = 570/884 (64%), Gaps = 37/884 (4%) Strand=Plus/Minus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 || ||||| ||||| | ||||| |||| |||||||| || || || || ||||| ||| Sbjct 26405103 TTTCCCATTGAGTACCATGATATCTGGCAGATGTACAAGAAAGCTGAGGCCTCCTTTTGG 26405044 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGCGG 61184 || | ||| |||| || | ||||| || || | ||||||| || || | | | Sbjct 26405043 ACTGCTGAGAAGGTGGACCTTTCCAAGGATATTCAGCACTGGGAAGCTTTGAACC--CCA 26404986 Query 61185 TGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAA 61244 ||| |||||| ||| || || |||| |||||||| | | || || || |||| Sbjct 26404985 TGAGAGACATTTTATTGCTCACGTTCTGGCTTTCTTTGCAGTGTGTGATGGCATAGTCAG 26404926 Query 61245 TGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTA 61304 ||| || || ||| || ||| || || || ||||| | ||| | || |||||||| Sbjct 26404925 TGAAAACTT---GGAGCGATTCAGCCAAGAAGTTCAAGTTACAGAGACCCGCTGTTTCTA 26404869 Query 61305 CGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATAC 61364 |||||||| ||||||||||| || | ||||| || || |||||| | || || || || Sbjct 26404868 TGGCTTCCAAATTGCCATGGAAAACATACACTCTGAAATATACAGTCTCCTTATTGACAC 26404809 Query 61365 GTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGC 61424 ||||| | || | ||| | || | |||||||| || || || || || Sbjct 26404808 TTACATTAAAGACCCCAAAGAAAGAGAGTATCTCTTCAATGCTATTGAAACAATGCC--T 26404751 Query 61425 GGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGG 61484 || || ||| || ||||||||||| ||||| | |||| | || | || Sbjct 26404750 TGT-AAAAAGAATGCTGATTGGGCCTTGCCTTGGA--GTGGGGACAATG--CAC-TGGGG 26404697 Query 61485 TGAACGATTGCTGGCATTTGCGGTGGTCGAGG--GTGTATTTTTCAGTGGATCGTTTGCC 61542 || || | |||| ||||| | ||| || | | | ||||| ||| | ||||| Sbjct 26404696 ACAAAGAGTTGTGGCCTTTGCCGAGGTAGAAGCAATTTTTTTTTTTCTGGTCCATTTGCA 26404637 Query 61543 GCAATCTTTTGGTTGAAGAAACGTGGACTTA------------TGCCCGGTCTGACCTTC 61590 | || ||| | |||||||| ||||||| ||| || || || || Sbjct 26404636 CTGACATTCTGGCTCAAGAAACGGGGACTTACATTTTCCAATGAGCCAGGCCTTACATTT 26404577 Query 61591 AGCAATGAG-TTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTGTTTTGCTAT 61648 ||||||| || || || | |||||||| | | || || |||| ||| || | | Sbjct 26404576 CCCAATGAGCTTATTAGCA-GAGACGAGGGTTTATACTGGGACTTTGTCTG-CCTGATTT 26404519 Query 61649 TCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGG 61708 |||| | | ||||| | || || || || | | || || | | | Sbjct 26404518 TCAAGC---ACCTGGTACACAAGCCATCAAAGCAGAGAGGAAAAGAAATAATCGCCAACG 26404462 Query 61709 CGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGA 61768 ||| | || || |||| || || | | || ||||| || ||||||| | |||| Sbjct 26404461 TGGTTAGGATAGAGCAGGCGTTCCTCATCAAGGCCTTGCCTGTGAAACTCATCTGGATGA 26404402 Query 61769 ATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGG 61828 ||| | ||| |||||| |||||||||| |||||| | || || | || ||| Sbjct 26404401 ATTACACTTTGATGAAGCAGTACTTTGAATTTGTGGCCGACAGGCTTATGCTGGAGCTGG 26404342 Query 61829 GTATGAAGCGGATCTATAATACGA-AAAACCCATTTGATTTCATGGACATGATTTCGCTG 61887 || | || ||| | | | | | |||| |||||||| |||||||| | ||||| || Sbjct 26404341 GTTTTAATAAGAT-TTTCAGAGTAGAAAATCCATTTGACTTCATGGAAAATATTTCACTA 26404283 Query 61888 GATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | || ||||| || || || ||||| || | |||||| || || Sbjct 26404282 CAAGGAAAGACAAACTTCTTTGAGAAGCGAGGAGGCGAGTAGCA 26404239 >seq1 Length=172151128 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| || ||||| || ||||| ||||| |||| ||||| || Sbjct 73310444 GGTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTG 73310385 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || || || | ||| ||||| | |||||| || || || ||||| || Sbjct 73310384 GTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCCGTCTCCGTCTG 73310325 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||||||||||||||| |||||| Sbjct 73310324 GGACTCAATGATGGCGTACCAAAG 73310301 Score = 102 bits (112), Expect = 6e-17 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || |||||||||||||||||| ||||| || | Sbjct 73308480 CATGAAGAGATCTGGGATCCAAAGCGCAAAGAAGAGATCGCGTGCTCTCTGCTCTTCCTT 73308421 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||| ||| || || |||||| ||||||||||||||||| ||||| |||||||||| Sbjct 73308420 GCCTGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGTTCCAGGT 73308362 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 73308361 AAATAGCAAA 73308352 >seq21 Length=68186955 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| ||||| ||||||||||| || | ||||| || || ||||| || || |||| Sbjct 4937055 TGGAGCGTTTTAGTCAGGAGGTGCAGGTTCCAGAGGCTCGCTGCTTCTATGGTTTTCAGA 4936996 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| |||||||||||||||||| | || || || || |||||||| | Sbjct 4936995 TTCTCATCGAGAATGTTCACTCGGAGATGTACAGTTTACTAATAGACACTTACATCAGAG 4936936 Query 61376 A 61376 | Sbjct 4936935 A 4936935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555494125840