Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq18 131 3e-28 seq14 131 3e-28 seq1 100 4e-19 >seq18 Length=130317789 Score = 131 bits (144), Expect = 3e-28 Identities = 155/205 (76%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 30 AGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATC 89 ||||| ||||| | | |||||| |||||| ||||||| | | || ||||||||| | Sbjct 701059 AGCTT-ATGACCCACACTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGCAATCCCC 701116 Query 90 TATCCCCATCACGA-TGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGAC 148 ||||||||||||| || ||| | | ||||||| |||| ||| ||| | || Sbjct 701117 GATCCCCATCACGAATGGGGTTTAACGGGTTACCCGCGCCTGCCGGTGTAGGGTAGGCAC 701176 Query 149 TCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 208 || ||| ||||||||||||| |||| |||| | |||||||||||||||||||||| Sbjct 701177 ACGCTGAGCCAGTCAGTGTAGCGCGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACC 701236 Query 209 TGTTATTGCCTCAAACTTCCGTGGC 233 |||||||| ||||| ||| ||||| Sbjct 701237 TGTTATTG-CTCAATCTTGGGTGGC 701260 >seq14 Length=152946536 Score = 131 bits (144), Expect = 3e-28 Identities = 176/236 (75%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| ||||| || |||||| |||||| | Sbjct 75068756 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTGCACTTACTGGGAATT-C 75068699 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | || ||||||||| | || |||||||||| ||||| | || Sbjct 75068698 CTCGTTCGTGGGGAATAATTGCAATCCCCGATTCCCATCACGAATGGGGTTCAATGGGTT 75068639 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGT--TGAATACATCAGTGTAGCGCGCGTG 177 ||||| |||| | || || || ||| | | | ||| |||||||| | ||||| Sbjct 75068638 ACCCGCGCCTGCCTGCATAG-TG-TAGGCACATGCTGAGCTAGTCAGTGTATCTGGCGTG 75068581 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 75068580 CAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 75068526 >seq1 Length=198846266 Score = 100 bits (110), Expect = 4e-19 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 91 ATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACT 149 ||||||||||||| ||||| | ||||||| |||| |||| ||| | || Sbjct 55631863 ATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACA 55631922 Query 150 CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 209 || ||| |||||||||||||||||| |||| | ||||||||||||||||||||||| Sbjct 55631923 CGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCT 55631982 Query 210 GTTATTGCCTCAAACTTCCGTGGC 233 ||||||| ||||| || ||||| Sbjct 55631983 GTTATTG-CTCAATCTCGGGTGGC 55632005 Score = 89.7 bits (98), Expect = 8e-16 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||||| |||| |||| ||| | || || ||| ||||||||||| ||||| Sbjct 55629971 TTACCCGTGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGTGCGTG 55630030 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 55630031 CAGCCCGGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 55630085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751960631860