Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq18 131 3e-28
seq14 131 3e-28
seq1 100 4e-19
>seq18
Length=130317789
Score = 131 bits (144), Expect = 3e-28
Identities = 155/205 (76%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 30 AGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATC 89
||||| ||||| | | |||||| |||||| ||||||| | | || ||||||||| |
Sbjct 701059 AGCTT-ATGACCCACACTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGCAATCCCC 701116
Query 90 TATCCCCATCACGA-TGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGAC 148
||||||||||||| || ||| | | ||||||| |||| ||| ||| | ||
Sbjct 701117 GATCCCCATCACGAATGGGGTTTAACGGGTTACCCGCGCCTGCCGGTGTAGGGTAGGCAC 701176
Query 149 TCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 208
|| ||| ||||||||||||| |||| |||| | ||||||||||||||||||||||
Sbjct 701177 ACGCTGAGCCAGTCAGTGTAGCGCGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACC 701236
Query 209 TGTTATTGCCTCAAACTTCCGTGGC 233
|||||||| ||||| ||| |||||
Sbjct 701237 TGTTATTG-CTCAATCTTGGGTGGC 701260
>seq14
Length=152946536
Score = 131 bits (144), Expect = 3e-28
Identities = 176/236 (75%), Gaps = 8/236 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||| || ||||| ||||| || |||||| |||||| |
Sbjct 75068756 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTGCACTTACTGGGAATT-C 75068699
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | || ||||||||| | || |||||||||| ||||| | ||
Sbjct 75068698 CTCGTTCGTGGGGAATAATTGCAATCCCCGATTCCCATCACGAATGGGGTTCAATGGGTT 75068639
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGT--TGAATACATCAGTGTAGCGCGCGTG 177
||||| |||| | || || || ||| | | | ||| |||||||| | |||||
Sbjct 75068638 ACCCGCGCCTGCCTGCATAG-TG-TAGGCACATGCTGAGCTAGTCAGTGTATCTGGCGTG 75068581
Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
| |||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 75068580 CAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 75068526
>seq1
Length=198846266
Score = 100 bits (110), Expect = 4e-19
Identities = 110/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 91 ATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACT 149
||||||||||||| ||||| | ||||||| |||| |||| ||| | ||
Sbjct 55631863 ATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACA 55631922
Query 150 CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 209
|| ||| |||||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 55631923 CGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCT 55631982
Query 210 GTTATTGCCTCAAACTTCCGTGGC 233
||||||| ||||| || |||||
Sbjct 55631983 GTTATTG-CTCAATCTCGGGTGGC 55632005
Score = 89.7 bits (98), Expect = 8e-16
Identities = 90/116 (78%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177
||||||| |||| |||| ||| | || || ||| ||||||||||| |||||
Sbjct 55629971 TTACCCGTGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGTGCGTG 55630030
Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
| |||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 55630031 CAGCCCGGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 55630085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751960631860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |