Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq2 104 1e-20
seq20 71.6 8e-11
>seq2
Length=131945496
Score = 104 bits (114), Expect = 1e-20
Identities = 93/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||| |||| || ||| |||| ||| |||| ||||| ||||
Sbjct 81771436 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 81771495
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||| | ||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 81771496 CATCGCCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 81771552
>seq20
Length=148322235
Score = 71.6 bits (78), Expect = 8e-11
Identities = 85/115 (74%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||| |||| || ||| |||| ||| |||| ||||| ||
Sbjct 58614807 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCAGCAGGTCATGGGAATAACCCTGCTG 58614866
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
||| | ||||||||| ||| ||| |||| |||||||||||||| |||||
Sbjct 58614867 AATCGCCAGTCGGCATTGTT---GGTCGGAACTATGACGGTATCTGATCATCTTC 58614918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278385895560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |