Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq11 96.9 6e-18 seq20 95.1 2e-17 seq13 77.0 6e-12 >seq11 Length=59623150 Score = 96.9 bits (106), Expect = 6e-18 Identities = 121/163 (74%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | |||| ||||||| ||||||||||| Sbjct 9473445 ATGCTCTTAGCTGAGTGTCCCGAGGGGCCCAAAGCGTTTATTTTGAAAGAATTAGAGTGT 9473504 Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||| ||||||| ||| |||| || ||||||| ||||||||| | ||| Sbjct 9473505 TCAAAACAGGCCTGAGCCGCTTAGATACTGCAGTTAAGAATAATGGAATAGGACCT-CGG 9473563 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||||||||||||| || || | | |||||||| ||| Sbjct 9473564 TTCTATTTTGTTGGTTTTCAGAACTGAGGCCATGATTAAGAGG 9473606 >seq20 Length=148322235 Score = 95.1 bits (104), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| | | || ||| | | | |||||||||||||||||||||||| Sbjct 18761150 ATGCTCTTAGCTGAGTGTCCTGCGGGGCC-GAAGTGTTTACTTTGAAAAAATTAGAGTGT 18761208 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| ||||||| ||||||||| |||| Sbjct 18761209 TCAAAGCAGGCCCAAGCCGCCTGGATACCACAGCTAAGAATAATGGAATAGGAC-CGCGG 18761267 Query 155 TTCTATTTTGTTGGTTT 171 ||||||||| ||||||| Sbjct 18761268 TTCTATTTTATTGGTTT 18761284 Score = 95.1 bits (104), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| | | || ||| | | | |||||||||||||||||||||||| Sbjct 18763342 ATGCTCTTAGCTGAGTGTCCTGCGGGGCC-GAAGTGTTTACTTTGAAAAAATTAGAGTGT 18763400 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| ||||||| ||||||||| |||| Sbjct 18763401 TCAAAGCAGGCCCAAGCCGCCTGGATACCACAGCTAAGAATAATGGAATAGGAC-CGCGG 18763459 Query 155 TTCTATTTTGTTGGTTT 171 ||||||||| ||||||| Sbjct 18763460 TTCTATTTTATTGGTTT 18763476 >seq13 Length=160222558 Score = 77.0 bits (84), Expect = 6e-12 Identities = 127/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATA 201 ||||||| | | |||||||||||||||||| || || || |||||| | ||||| | Sbjct 12917839 ATAGGACTT-CAGTTCTATTTTGTTGGTTTTCAGAACTCAGGTCATGATTCAGAGGGACA 12917897 Query 202 GTCGGGGGTGTCAGTATT-CAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260 | ||||| | | |||| | | | ||| |||| |||||||||| ||||| | Sbjct 12917898 GATGGGGGCATTATTATTGCTACACT-AGACTTGAAGTTCTTGGATTGGCACAAGACAGA 12917956 Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || ||||| || | ||| |||||||||||||||| |||| ||||| || || Sbjct 12917957 CCCTAGCAAAAGCATTGGCAAAGAATGTTTTCATTAATCA-AGAACAAAAGTCAGAGG 12918013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915150542592