Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq13 141 4e-31 seq4 136 2e-29 seq17 125 3e-26 seq9 125 3e-26 seq15 118 4e-24 seq3 102 3e-19 seq12 89.7 2e-15 seq7 87.8 7e-15 seq2 87.8 7e-15 seq1 78.8 4e-12 >seq13 Length=160222558 Score = 141 bits (156), Expect = 4e-31 Identities = 111/130 (85%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 555 GAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||| || ||| || |||||||||||||||||||||||||||| |||| ||||||||| Sbjct 34484131 GAGCTTATGCT-TTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGA 34484189 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||| | |||||| ||| |||||||||| ||||| | |||||| Sbjct 34484190 GGAAACTCTGGTGGAGGGCCATAGCGGTCCTGAAGTGCAAATCGGTCGTCCGACTTGGGT 34484249 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 34484250 ATAGGGGCGA 34484259 >seq4 Length=114123490 Score = 136 bits (150), Expect = 2e-29 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||| |||||||||||||| |||||||||||| |||| |||| Sbjct 93653403 GAGCACGAGCGTATGCGTTAGGACCCGAAAGATGACGAACTATGCCTGGGCAGGGCGAAG 93653462 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 93653463 CCAGAGGAAACTCTGGTGGAGGTCCGAAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 93653522 Query 669 TGGGTATAGGGGCGA 683 |||||||||| |||| Sbjct 93653523 TGGGTATAGGAGCGA 93653537 Score = 123 bits (136), Expect = 1e-25 Identities = 86/98 (88%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 81004439 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 81004380 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || || |||||| ||| ||||||||||| | ||| || Sbjct 81004379 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTTGTCCAA 81004342 Score = 104 bits (114), Expect = 1e-19 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||||| |||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 46777459 GTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGC 46777518 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| | | ||| || || | ||||||| | | ||| || ||||||||||||| Sbjct 46777519 TGGAAGTCTGTAGCAGTCATGACCTGCAAATTGGTGGTCCAACCTGGGTATAGGGGC 46777575 >seq17 Length=136257712 Score = 125 bits (138), Expect = 3e-26 Identities = 110/136 (81%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||||||| ||| ||||| |||||||||||||||||||||| |||| |||| Sbjct 5193107 GAGCACGAGCATAGGAGTTAGGACCAGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 5193166 Query 609 CCAGAGGAAA-CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||| | | | |||||| || |||||| ||| | |||||||| ||||| | Sbjct 5193167 CCAGAGGAAACCCCCGATGGAGGTCCGTAGCGGTCCTGACATGCAAATCAGTCGTCCGAC 5193226 Query 668 TTGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 5193227 CTGGGTATAGGGGCGA 5193242 >seq9 Length=94415995 Score = 125 bits (138), Expect = 3e-26 Identities = 92/107 (86%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636 |||||||||||||||||||| |||| |||||||||||||||||||||||||| || | Sbjct 71473198 AAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTA 71473139 Query 637 GCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||| | ||||||||| ||||| || |||||||| |||||| Sbjct 71473138 GCGGTCCTGACATGCAAATCGGTCGTCCGATCTGGGTATAAGGGCGA 71473092 >seq15 Length=152823684 Score = 118 bits (130), Expect = 4e-24 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 147005456 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 147005515 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 147005516 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 147005575 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || |||||| ||| | ||| || || Sbjct 147005576 AGAGAGTTCAAGAGGGTGTGAAACCGTTAAGAGGTAAACG 147005615 Score = 80.6 bits (88), Expect = 1e-12 Identities = 81/104 (78%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATG----CCTGAATAGGGTGAAGCCAGAGGAAAC 619 |||| |||| |||||||||||||||||| ||||| || | |||||||||||| | Sbjct 144125457 TGTTAGGACGGGAAAGATGGTGAACTATGTATGCCTGAGCAGAGCAAAGCCAGAGGAA-C 144125399 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||||||||| || || ||| ||| ||||||| | ||||| Sbjct 144125398 TCTGGTGGAGGTTCAGAGTGGTCCTGATGTGCAAACTGGTCGTC 144125355 >seq3 Length=125065471 Score = 102 bits (112), Expect = 3e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 ||||||||||||||||| |||| ||||||||||||||||||||||||| | |||| Sbjct 31684758 ATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTGGAGGTCTGTAGCG 31684699 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||| | ||||||||| || || | || |||||||||||| Sbjct 31684698 GTCCTGACCTGCAAATCGGTCCTCCGACCTGAGTATAGGGGCGA 31684655 >seq12 Length=182815943 Score = 89.7 bits (98), Expect = 2e-15 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 |||| |||| ||||||||||||||||||||||||||||||| | |||||| ||| | Sbjct 11234348 CTATACCTGGCCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGTCCATAGCGGTCCTGAC 11234407 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATA 676 ||||||||| || || || |||||||| Sbjct 11234408 ATGCAAATCGGTCATCTAACCTGGGTATA 11234436 >seq7 Length=104786220 Score = 87.8 bits (96), Expect = 7e-15 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 || || |||||||||||||||||||||| |||| ||||||||| ||||||||||| | Sbjct 50576479 GGTCCTGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGAAAACTCTGGTGAA 50576538 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || | || ||| | |||||||||| ||| | | ||| ||||||||| Sbjct 50576539 GGTCCATAGGGGTCCCAACGTGCAAATCCATCTTTCTACCTGGATATAGGGGC 50576591 >seq2 Length=131945496 Score = 87.8 bits (96), Expect = 7e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 ||||||||||||||||| ||| |||||||||||||||||||||||||| | ||| Sbjct 105052613 ATGGTGAACTATGCCTGGGCAGGTCGAAGCCAGAGGAAACTCTGGTGGAGGTCCATAGCA 105052672 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 || ||| ||||||||| | | ||| | ||||||| Sbjct 105052673 GTCCTGACGTGCAAATTGGTGGTCCGACCTGGGTAT 105052708 >seq1 Length=198846266 Score = 78.8 bits (86), Expect = 4e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||| |||||||||||||||||||||| |||| |||||||| ||| ||||| | Sbjct 151481743 TTGGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGAGAAGCCAGGGGAGGCTCTGAT 151481684 Query 626 GGAGGCTCGCAGCGGTTCTGG 646 ||||| | ||||||| || Sbjct 151481683 GGAGGTCCTTGGCGGTTCCGG 151481663 Score = 78.8 bits (86), Expect = 4e-12 Identities = 88/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||| |||||| ||||||||||||||| |||| ||||||| | | ||| ||| Sbjct 151823874 TTGGGACCTGAAAGAAGGTGAACTATGCCTGGGCAGGGCAAAGCCAGGGAAGGCTCAGGT 151823933 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| | ||||| ||||| |||| | | | ||| | ||| | ||||||||| Sbjct 151823934 GGAGGTCCTTGGCGGTCCTGGCTTGCAGGTTGGTAGTCCGACCTGGCTGTAGGGGCGA 151823991 Score = 78.8 bits (86), Expect = 4e-12 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||| |||||||||||||||||||||| |||| |||||| | || ||||||| Sbjct 151842585 TTGGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCGGCAGAGGCTCTGGT 151842526 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGC 651 ||||| | ||||||||| | ||| Sbjct 151842525 GGAGGTCCTTGGCGGTTCTGTCCTGC 151842500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079884084200