Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq1 140 1e-31 seq2 77.0 1e-12 >seq1 Length=198846266 Score = 140 bits (154), Expect = 1e-31 Identities = 92/102 (90%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 56768649 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACTGCGAGTGAACAGGGAAGAGCCAAGCG 56768590 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||| || | | |||| |||| ||||||| || Sbjct 56768589 CCGAATCCCCGCCGCGTGTCGCGGCGTGGGAAATGTGGCATA 56768548 >seq2 Length=131945496 Score = 77.0 bits (84), Expect = 1e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGC 61 ||||||||||||||||| |||||||||| | | ||||||||||||||||||| || | Sbjct 49654547 GAAAAGAAACTAACCAGCATTCCCTCAGGCAAGATGAGTGAACAGGGAAGAGCCTGGCAC 49654488 Query 62 CGAATCCCCGCC 73 |||| ||| || Sbjct 49654487 TGAATTCCCACC 49654476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230388327360