Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1 239 7e-61 seq14 165 1e-38 seq17 141 1e-31 seq12 131 3e-28 seq20 122 1e-25 seq18 107 3e-21 seq19 93.3 7e-17 seq13 73.4 6e-11 >seq1 Length=198846266 Score = 239 bits (264), Expect = 7e-61 Identities = 208/252 (83%), Gaps = 10/252 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 55630013 GTCAGTGTAGCGTGCGTGCAGCCCGGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 55630071 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | |||| ||| | Sbjct 55630072 CAATCT-CAGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACACCGACCGCT 55630130 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 55630131 CGGGGGTCGCGTAACTAGTTAGCACGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 55630190 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 55630191 AAATCACTCCACCAACTAAGAACGGCCATGCACCACTACCCACGGAATCGAGAAAGAGCT 55630250 Query 248 ATC-AATCTGTC 258 ||| |||||||| Sbjct 55630251 ATCAAATCTGTC 55630262 Score = 233 bits (258), Expect = 3e-59 Identities = 207/252 (82%), Gaps = 10/252 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 55631933 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 55631991 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 55631992 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 55632050 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 55632051 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 55632110 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 55632111 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACGGAATCGAGAAAGAGCT 55632170 Query 248 ATC-AATCTGTC 258 ||| |||||||| Sbjct 55632171 ATCAAATCTGTC 55632182 >seq14 Length=152946536 Score = 165 bits (182), Expect = 1e-38 Identities = 193/255 (76%), Gaps = 17/255 (7%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| | |||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 75068598 GTCAGTGTATCTGGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 75068540 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131 ||| || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 75068539 CAATCT-CAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGC- 75068482 Query 132 GTCGATGGGGCTATTTAGCAGGTTA-------AG-GTCTCGTTCGTTATCGGAATTAACC 183 ||| |||| | || | |||| || ||||| |||||||||| |||||||| Sbjct 75068481 -TCG--GGGGTTGCATAACTAGTTATTATGCCAGAGTCTCTTTCGTTATCGTAATTAACC 75068425 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 |||||| | ||| |||||||||||| ||| | |||||||| || ||||| |||||| Sbjct 75068424 AGACAACTTGCTCTGCCAACTAAGAACAGCCTTACACCACCAATCACGGAATCGAGAAAG 75068365 Query 244 AGCTATCAATCTGTC 258 |||||||| |||||| Sbjct 75068364 AGCTATCATTCTGTC 75068350 >seq17 Length=136257712 Score = 141 bits (156), Expect = 1e-31 Identities = 181/244 (74%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 |||||| | ||| |||| | ||||||||||||||||||||| ||||||||| || | | Sbjct 86618890 TGTAGCTCCTGTGTAGCCCTGGACATCTAAGGGCATCACAGACATGTTATTGC-TCTATC 86618948 Query 80 TTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAGTCGATG 138 | | |||||| | ||| | | |||||||||||| | || || | | | Sbjct 86618949 T-CGGGTGGCTGAACACCACTTGCCCCTCTAAGAAGTTGGGGGACATGGGATGCTTGCTT 86619007 Query 139 GGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 ||| ||| |||||| | | ||||| ||| ||| ||||||| |||||||||||||| Sbjct 86619008 GGGGTAGCTAGTTAGCACGCCAGAGTCTCCTTCATTACCGGAATTTACCAGACAAATCAC 86619067 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||||||||| ||| |||||| ||||||| |||| |||| | || |||||| Sbjct 86619068 TCCACCAACTAAGAATGGCTATGCACTGCCACCCACGGAATGGAGAA--ATCTGTCAATC 86619125 Query 255 TGTC 258 |||| Sbjct 86619126 TGTC 86619129 >seq12 Length=182815943 Score = 131 bits (144), Expect = 3e-28 Identities = 160/216 (74%), Gaps = 17/216 (8%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||| |||| |||| | ||||||||||||||| ||||||||||| ||| || Sbjct 25020075 CAGTGTAGCGCCTGTGCAGCCCTGGACATCTAAGGGCATCTCAGACCTGTTACTGC-TCT 25020017 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCATAGT 133 | || | || ||| | |||| | |||||||||||||| | | ||| Sbjct 25020016 ATCT-CAGGTGACTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGATGCTGACCG---- 25019962 Query 134 CGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||| ||| ||| |||||| | | ||||| ||| ||||||||||||||||| Sbjct 25019961 CGAGGGGCTCTTGTAACTAGTTAGCATGCCAGAGTCTCATTCATTATCGGAATTAACCAG 25019902 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 ||||||| ||||||| |||||||||||||||| ||| Sbjct 25019901 ACAAATCGCTCCACCCACTAAGAACGGCCATGTACC 25019866 Score = 78.8 bits (86), Expect = 1e-12 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | || ||||| || |||||| |||||||||||||||| | || || || Sbjct 70411405 CTAATTAGCATGCCAAAGTCTCATTTGTTATCAGAATTAACCAGACAAACCGCTTCATCA 70411464 Query 202 ACTAAGAACGGCCATGCA 219 ||||||| ||||||||| Sbjct 70411465 GCTAAGAATGGCCATGCA 70411482 >seq20 Length=148322235 Score = 122 bits (134), Expect = 1e-25 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| Sbjct 58614590 TTATCGGAATTAACCAGACAAATCGCTCCAACAACTAAGAATGGCCATGCACCACCACCC 58614649 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||| | ||||||||||||||||||| Sbjct 58614650 ACGCAATTGATAAAGAGCTATCAATCTGTC 58614679 >seq18 Length=130317789 Score = 107 bits (118), Expect = 3e-21 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||| |||| |||| | |||||||||||||||||||||||||||||| || Sbjct 701188 GTCAGTGTAGCGCGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 701246 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| ||| |||||| | |||| | ||||| |||||||| Sbjct 701247 CAATCTT-GGGTGGCTGAATGCCACTTGTCCCGCTAAGAAG 701286 >seq19 Length=126249303 Score = 93.3 bits (102), Expect = 7e-17 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| ||| | ||| ||||| |||||| |||| ||||||||||||||||| ||||| | Sbjct 238047 TCTCATTCCTCATCAGAATTTACCAGAGAAATTACTCCACCAACTAAGAATTACCATGAA 238106 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| | || | || ||||||||||| |||||| || Sbjct 238107 CCACCATCTATGGTATTGAGAAAGAGCTAACAATCTTTC 238145 >seq13 Length=160222558 Score = 73.4 bits (80), Expect = 6e-11 Identities = 59/70 (84%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 155 TAAG-GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGC 213 |||| ||||| || |||| |||||||||||||||| || |||||||| ||||||| ||| Sbjct 73018465 TAAGAGTCTCATTTGTTACCGGAATTAACCAGACAGGTCTCTCCACCAGCTAAGAATGGC 73018524 Query 214 CATGCACCAC 223 |||| | ||| Sbjct 73018525 CATGAAACAC 73018534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796758286524