Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1 239 7e-61
seq14 165 1e-38
seq17 141 1e-31
seq12 131 3e-28
seq20 122 1e-25
seq18 107 3e-21
seq19 93.3 7e-17
seq13 73.4 6e-11
>seq1
Length=198846266
Score = 239 bits (264), Expect = 7e-61
Identities = 208/252 (83%), Gaps = 10/252 (4%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 55630013 GTCAGTGTAGCGTGCGTGCAGCCCGGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 55630071
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
||| || | |||||| | |||| | |||||||||||||| | |||| ||| |
Sbjct 55630072 CAATCT-CAGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACACCGACCGCT 55630130
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 55630131 CGGGGGTCGCGTAACTAGTTAGCACGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 55630190
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
|||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 55630191 AAATCACTCCACCAACTAAGAACGGCCATGCACCACTACCCACGGAATCGAGAAAGAGCT 55630250
Query 248 ATC-AATCTGTC 258
||| ||||||||
Sbjct 55630251 ATCAAATCTGTC 55630262
Score = 233 bits (258), Expect = 3e-59
Identities = 207/252 (82%), Gaps = 10/252 (4%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 55631933 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 55631991
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
||| || | |||||| | |||| | |||||||||||||| | | || ||| |
Sbjct 55631992 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 55632050
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 55632051 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 55632110
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 55632111 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACGGAATCGAGAAAGAGCT 55632170
Query 248 ATC-AATCTGTC 258
||| ||||||||
Sbjct 55632171 ATCAAATCTGTC 55632182
>seq14
Length=152946536
Score = 165 bits (182), Expect = 1e-38
Identities = 193/255 (76%), Gaps = 17/255 (7%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||| | |||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 75068598 GTCAGTGTATCTGGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 75068540
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131
||| || | |||||| | |||| | |||||||||||||| | | || |||
Sbjct 75068539 CAATCT-CAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGC- 75068482
Query 132 GTCGATGGGGCTATTTAGCAGGTTA-------AG-GTCTCGTTCGTTATCGGAATTAACC 183
||| |||| | || | |||| || ||||| |||||||||| ||||||||
Sbjct 75068481 -TCG--GGGGTTGCATAACTAGTTATTATGCCAGAGTCTCTTTCGTTATCGTAATTAACC 75068425
Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243
|||||| | ||| |||||||||||| ||| | |||||||| || ||||| ||||||
Sbjct 75068424 AGACAACTTGCTCTGCCAACTAAGAACAGCCTTACACCACCAATCACGGAATCGAGAAAG 75068365
Query 244 AGCTATCAATCTGTC 258
|||||||| ||||||
Sbjct 75068364 AGCTATCATTCTGTC 75068350
>seq17
Length=136257712
Score = 141 bits (156), Expect = 1e-31
Identities = 181/244 (74%), Gaps = 9/244 (4%)
Strand=Plus/Plus
Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79
|||||| | ||| |||| | ||||||||||||||||||||| ||||||||| || | |
Sbjct 86618890 TGTAGCTCCTGTGTAGCCCTGGACATCTAAGGGCATCACAGACATGTTATTGC-TCTATC 86618948
Query 80 TTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAGTCGATG 138
| | |||||| | ||| | | |||||||||||| | || || | | |
Sbjct 86618949 T-CGGGTGGCTGAACACCACTTGCCCCTCTAAGAAGTTGGGGGACATGGGATGCTTGCTT 86619007
Query 139 GGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194
||| ||| |||||| | | ||||| ||| ||| ||||||| ||||||||||||||
Sbjct 86619008 GGGGTAGCTAGTTAGCACGCCAGAGTCTCCTTCATTACCGGAATTTACCAGACAAATCAC 86619067
Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254
||||||||||||||| ||| |||||| ||||||| |||| |||| | || ||||||
Sbjct 86619068 TCCACCAACTAAGAATGGCTATGCACTGCCACCCACGGAATGGAGAA--ATCTGTCAATC 86619125
Query 255 TGTC 258
||||
Sbjct 86619126 TGTC 86619129
>seq12
Length=182815943
Score = 131 bits (144), Expect = 3e-28
Identities = 160/216 (74%), Gaps = 17/216 (8%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
||||||||||| |||| |||| | ||||||||||||||| ||||||||||| ||| ||
Sbjct 25020075 CAGTGTAGCGCCTGTGCAGCCCTGGACATCTAAGGGCATCTCAGACCTGTTACTGC-TCT 25020017
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCATAGT 133
| || | || ||| | |||| | |||||||||||||| | | |||
Sbjct 25020016 ATCT-CAGGTGACTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGATGCTGACCG---- 25019962
Query 134 CGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
||| ||| ||| |||||| | | ||||| ||| |||||||||||||||||
Sbjct 25019961 CGAGGGGCTCTTGTAACTAGTTAGCATGCCAGAGTCTCATTCATTATCGGAATTAACCAG 25019902
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221
||||||| ||||||| |||||||||||||||| |||
Sbjct 25019901 ACAAATCGCTCCACCCACTAAGAACGGCCATGTACC 25019866
Score = 78.8 bits (86), Expect = 1e-12
Identities = 64/78 (82%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | || ||||| || |||||| |||||||||||||||| | || || ||
Sbjct 70411405 CTAATTAGCATGCCAAAGTCTCATTTGTTATCAGAATTAACCAGACAAACCGCTTCATCA 70411464
Query 202 ACTAAGAACGGCCATGCA 219
||||||| |||||||||
Sbjct 70411465 GCTAAGAATGGCCATGCA 70411482
>seq20
Length=148322235
Score = 122 bits (134), Expect = 1e-25
Identities = 81/90 (90%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 58614590 TTATCGGAATTAACCAGACAAATCGCTCCAACAACTAAGAATGGCCATGCACCACCACCC 58614649
Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| ||| | |||||||||||||||||||
Sbjct 58614650 ACGCAATTGATAAAGAGCTATCAATCTGTC 58614679
>seq18
Length=130317789
Score = 107 bits (118), Expect = 3e-21
Identities = 86/101 (85%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||||||| |||| |||| | |||||||||||||||||||||||||||||| ||
Sbjct 701188 GTCAGTGTAGCGCGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 701246
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
||| ||| |||||| | |||| | ||||| ||||||||
Sbjct 701247 CAATCTT-GGGTGGCTGAATGCCACTTGTCCCGCTAAGAAG 701286
>seq19
Length=126249303
Score = 93.3 bits (102), Expect = 7e-17
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219
|||| ||| | ||| ||||| |||||| |||| ||||||||||||||||| ||||| |
Sbjct 238047 TCTCATTCCTCATCAGAATTTACCAGAGAAATTACTCCACCAACTAAGAATTACCATGAA 238106
Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||| | || | || ||||||||||| |||||| ||
Sbjct 238107 CCACCATCTATGGTATTGAGAAAGAGCTAACAATCTTTC 238145
>seq13
Length=160222558
Score = 73.4 bits (80), Expect = 6e-11
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 155 TAAG-GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGC 213
|||| ||||| || |||| |||||||||||||||| || |||||||| ||||||| |||
Sbjct 73018465 TAAGAGTCTCATTTGTTACCGGAATTAACCAGACAGGTCTCTCCACCAGCTAAGAATGGC 73018524
Query 214 CATGCACCAC 223
|||| | |||
Sbjct 73018525 CATGAAACAC 73018534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796758286524
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |