Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq3 273 4e-71
seq5 251 1e-64
seq1 246 5e-63
seq11 241 2e-61
seq14 232 1e-58
seq19 221 2e-55
seq10 208 1e-51
seq8 170 3e-40
seq15 145 1e-32
seq9 143 5e-32
>seq3
Length=125065471
Score = 273 bits (302), Expect = 4e-71
Identities = 171/184 (93%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14474484 ACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 14474425
Query 111 CGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA 170
||||| |||||||||||| ||||||||||||||| |||||||||||||| ||||
Sbjct 14474424 CGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCATAAAGTG 14474365
Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 14474364 AGGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA 14474305
Query 231 CCTC 234
||||
Sbjct 14474304 CCTC 14474301
Score = 248 bits (274), Expect = 1e-63
Identities = 166/184 (90%), Gaps = 1/184 (1%)
Strand=Plus/Minus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 97278148 CCTGTCTCACGATGGTCTAAACCCAGTTCACGTTCCCTATTAGTGGGTGAAAAATCCAAC 97278089
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC-A 170
|||| |||||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 97278088 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGACATCGAAGGATCAAAAAGCGA 97278029
Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230
| || | |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 97278028 ATGTGGTTATGAACGCTTGGCAGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGATA 97277969
Query 231 CCTC 234
||||
Sbjct 97277968 CCTC 97277965
>seq5
Length=117181667
Score = 251 bits (278), Expect = 1e-64
Identities = 165/182 (91%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
||||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 51621759 CTGTCCCACGACAGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTAAACAATCCAACG 51621818
Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172
||| |||||||||||| ||||||||||||||||||||| |||||||| |||| ||
Sbjct 51621819 CTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAGAAAGTGAC 51621878
Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 51621879 GTCACTATGAATGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACC 51621938
Query 233 TC 234
||
Sbjct 51621939 TC 51621940
Score = 136 bits (150), Expect = 7e-30
Identities = 140/183 (77%), Gaps = 9/183 (5%)
Strand=Plus/Plus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| |||||||||||||| ||| |||||||||| | ||| |
Sbjct 41419562 CCTGTCTCACTGTGGTCTAAACCCAGCGCACATTCCCTATTAATTGGTTAGT-------- 41419613
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| |||||||||||| ||||||| | || | |||||| |||||||||||||| |
Sbjct 41419614 GCTTGGTGAATTCTGCTTCACAATGATAG-AGGAACTGACATCAAAGGATCAAAAAGCTA 41419672
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231
||| |||||| | |||||| ||| ||||| ||||||| |||| |||||||||| |||
Sbjct 41419673 CGTTGCTATGGGCACTTGGCCACCATTAGCCAATTATCCCCGTGGCAACTTTTCTGACAC 41419732
Query 232 CTC 234
|||
Sbjct 41419733 CTC 41419735
>seq1
Length=198846266
Score = 246 bits (272), Expect = 5e-63
Identities = 167/186 (90%), Gaps = 1/186 (1%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|| ||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||
Sbjct 100168043 TCCTCAGTAGGGTAAAACTAAC-TGTCTCACGACTGTCTAAACCCAGCTCACTTTCCCTA 100168101
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||||||||||| ||||| ||||||| |||| |||||||||||||| ||
Sbjct 100168102 TTAGTGGGTGAACAATCCAATGCTTAGTGAATTCTACTTCACAATGATAGGAAGAGCTGA 100168161
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|||||||||||||||||||||| | |||||||| |||||| ||||||||||| ||||||
Sbjct 100168162 CATCGAAGGATCAAAAAGCAACATTGCTATGAATGCTTGGTAGCCACAAGCCATTTATCC 100168221
Query 211 CTGTGG 216
||||||
Sbjct 100168222 CTGTGG 100168227
Score = 224 bits (248), Expect = 2e-56
Identities = 167/193 (87%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| || |||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 151829784 CCTGTCTCAAGAAGGTCTAAACCCAGCTCCAGTTCCCAAT-AGTGGGTGAACAATCCAAG 151829726
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| |||||||||||| ||||||||||||| ||||| ||||||||||| ||| |
Sbjct 151829725 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTGGACATGGAAGGATCAAATAGCTA 151829666
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231
||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 151829665 TGTCCCTATGAAAGCTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 151829606
Query 232 CTCTAGCCTCAAA 244
|||| | ||||||
Sbjct 151829605 CTCTTG-CTCAAA 151829594
Score = 219 bits (242), Expect = 7e-55
Identities = 166/193 (86%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| || |||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 151839877 CCTGTCTCAAGAAGGTCTAAACCCAGCTCCAGTTCCCAAT-AGTGGGTGAACAATCCAAG 151839935
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| |||||||||||| ||||||||||||| ||||| ||||||||||| ||| |
Sbjct 151839936 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTGGACATGGAAGGATCAAATAGCTA 151839995
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231
||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 151839996 TGTCCCTATGAAAGCTTGGCCTCCACAAGTCAGTTATCCCTGTGGTAACTTTTCTGACAC 151840055
Query 232 CTCTAGCCTCAAA 244
|||| | ||||||
Sbjct 151840056 CTCTTG-CTCAAA 151840067
Score = 111 bits (122), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 10/181 (6%)
Strand=Plus/Minus
Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA------AGGATCAAAAAGCA--ACG 173
||||||||| |||||||||||||| ||||| || |||||||||| | |||
Sbjct 65001255 TTCTGCTTCAA-ATGATAGGAAGAGCTGACATTGACATCAAAGGATCAAAAGTGACTACG 65001197
Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233
| ||||||| | ||||||||||||||| || |||||||| |||||||||||| |||||
Sbjct 65001196 TTGCTATGAGCACTTGGCTGCCACAAGTCAAATATCCCTGCTGTAACTTTTCTGACACCT 65001137
Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| || | || | || |||||||| ||| | ||||||||| || |||||||
Sbjct 65001136 CCTGCTTAAAGCCCAAAAGGTTAAAAGGATCATGAGGTCGCACTTTCAT-GTCTGTATTC 65001078
Query 294 A 294
|
Sbjct 65001077 A 65001077
>seq11
Length=59623150
Score = 241 bits (266), Expect = 2e-61
Identities = 153/166 (92%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115
||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 37457050 TCTGACGACGGTCTAAACCCAGCTCATGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 37456991
Query 116 ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTC 175
|||||||||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct 37456990 GGTGAATTCTGCTTCACAATGATAGGAAGAGCAGACATCGAAGGATCAAAAAGCGACGTC 37456931
Query 176 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221
|||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 37456930 GCTATGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACT 37456885
>seq14
Length=152946536
Score = 232 bits (256), Expect = 1e-58
Identities = 163/185 (88%), Gaps = 1/185 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 59659507 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 59659448
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 59659447 ACGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTTGGTGAACAATCCAACGCTTGGTG 59659388
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 59659387 AATTCTGCTTCACAGTGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 59659328
Query 180 TGAAC 184
|||||
Sbjct 59659327 TGAAC 59659323
>seq19
Length=126249303
Score = 221 bits (244), Expect = 2e-55
Identities = 164/194 (85%), Gaps = 12/194 (6%)
Strand=Plus/Minus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 80402603 CCTGTCTCATGACGGTCTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAAC 80402544
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 80402543 GCTTGGTAAATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGTGA 80402484
Query 172 CGTCGCTATGAA------------CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219
||| ||||||| |||||||||||| |||||||| |||| |||||||||
Sbjct 80402483 GGTCTCTATGAACGTTCTTAAATGCGCTTGGCTGCCTCAAGCCAGATATCTCTGTGGTAA 80402424
Query 220 CTTTTCTGGCACCT 233
|||||||| || ||
Sbjct 80402423 CTTTTCTGACAACT 80402410
Score = 98.7 bits (108), Expect = 2e-18
Identities = 54/54 (100%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115298431 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 115298378
>seq10
Length=90668104
Score = 208 bits (230), Expect = 1e-51
Identities = 151/175 (86%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 31740295 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 31740354
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 31740355 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGC 31740414
Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | || | |||||||| ||||| | |||||||||| |||||||
Sbjct 31740415 TTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCATGGTCTGTATTC 31740469
>seq8
Length=97876770
Score = 170 bits (188), Expect = 3e-40
Identities = 109/119 (92%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct 33692108 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACAGTCTAAACCCAGCTCACATTCCCTA 33692167
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|||||| |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 33692168 TTAGTGCGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG 33692226
>seq15
Length=152823684
Score = 145 bits (160), Expect = 1e-32
Identities = 100/112 (89%), Gaps = 1/112 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 86169266 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 86169325
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86169326 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 86169377
>seq9
Length=94415995
Score = 143 bits (158), Expect = 5e-32
Identities = 118/144 (82%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208
||||| ||||||||||||||||| || |||||||| |||| |||||||||||||||||||
Sbjct 19707340 GACATTGAAGGATCAAAAAGCAATGTGGCTATGAATGCTTAGCTGCCACAAGCCAGTTAT 19707281
Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268
|||| ||||||||||||||||||||| || | ||| | || | ||||||| |
Sbjct 19707280 CCCTATGGTAACTTTTCTGGCACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCCTGA 19707221
Query 269 GGCCACACTTTCATGGTTTGTATT 292
| | | |||||||||||||||||
Sbjct 19707220 AGTCCCGCTTTCATGGTTTGTATT 19707197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854353828224
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