Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3 273 4e-71 seq5 251 1e-64 seq1 246 5e-63 seq11 241 2e-61 seq14 232 1e-58 seq19 221 2e-55 seq10 208 1e-51 seq8 170 3e-40 seq15 145 1e-32 seq9 143 5e-32 >seq3 Length=125065471 Score = 273 bits (302), Expect = 4e-71 Identities = 171/184 (93%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14474484 ACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 14474425 Query 111 CGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA 170 ||||| |||||||||||| ||||||||||||||| |||||||||||||| |||| Sbjct 14474424 CGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCATAAAGTG 14474365 Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 14474364 AGGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA 14474305 Query 231 CCTC 234 |||| Sbjct 14474304 CCTC 14474301 Score = 248 bits (274), Expect = 1e-63 Identities = 166/184 (90%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| || ||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 97278148 CCTGTCTCACGATGGTCTAAACCCAGTTCACGTTCCCTATTAGTGGGTGAAAAATCCAAC 97278089 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC-A 170 |||| |||||||||||| |||||||||||||| ||||||||||||||||||||| | Sbjct 97278088 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGACATCGAAGGATCAAAAAGCGA 97278029 Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 | || | |||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 97278028 ATGTGGTTATGAACGCTTGGCAGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGATA 97277969 Query 231 CCTC 234 |||| Sbjct 97277968 CCTC 97277965 >seq5 Length=117181667 Score = 251 bits (278), Expect = 1e-64 Identities = 165/182 (91%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 ||||| || ||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 51621759 CTGTCCCACGACAGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTAAACAATCCAACG 51621818 Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 ||| |||||||||||| ||||||||||||||||||||| |||||||| |||| || Sbjct 51621819 CTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAGAAAGTGAC 51621878 Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 51621879 GTCACTATGAATGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACC 51621938 Query 233 TC 234 || Sbjct 51621939 TC 51621940 Score = 136 bits (150), Expect = 7e-30 Identities = 140/183 (77%), Gaps = 9/183 (5%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| |||||||||||||| ||| |||||||||| | ||| | Sbjct 41419562 CCTGTCTCACTGTGGTCTAAACCCAGCGCACATTCCCTATTAATTGGTTAGT-------- 41419613 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| |||||||||||| ||||||| | || | |||||| |||||||||||||| | Sbjct 41419614 GCTTGGTGAATTCTGCTTCACAATGATAG-AGGAACTGACATCAAAGGATCAAAAAGCTA 41419672 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 ||| |||||| | |||||| ||| ||||| ||||||| |||| |||||||||| ||| Sbjct 41419673 CGTTGCTATGGGCACTTGGCCACCATTAGCCAATTATCCCCGTGGCAACTTTTCTGACAC 41419732 Query 232 CTC 234 ||| Sbjct 41419733 CTC 41419735 >seq1 Length=198846266 Score = 246 bits (272), Expect = 5e-63 Identities = 167/186 (90%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || ||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||| Sbjct 100168043 TCCTCAGTAGGGTAAAACTAAC-TGTCTCACGACTGTCTAAACCCAGCTCACTTTCCCTA 100168101 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| ||||| ||||||| |||| |||||||||||||| || Sbjct 100168102 TTAGTGGGTGAACAATCCAATGCTTAGTGAATTCTACTTCACAATGATAGGAAGAGCTGA 100168161 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||||||| | |||||||| |||||| ||||||||||| |||||| Sbjct 100168162 CATCGAAGGATCAAAAAGCAACATTGCTATGAATGCTTGGTAGCCACAAGCCATTTATCC 100168221 Query 211 CTGTGG 216 |||||| Sbjct 100168222 CTGTGG 100168227 Score = 224 bits (248), Expect = 2e-56 Identities = 167/193 (87%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| || |||||||||||||||| |||||| || |||||||||||||||||| Sbjct 151829784 CCTGTCTCAAGAAGGTCTAAACCCAGCTCCAGTTCCCAAT-AGTGGGTGAACAATCCAAG 151829726 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| |||||||||||| ||||||||||||| ||||| ||||||||||| ||| | Sbjct 151829725 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTGGACATGGAAGGATCAAATAGCTA 151829666 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 151829665 TGTCCCTATGAAAGCTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 151829606 Query 232 CTCTAGCCTCAAA 244 |||| | |||||| Sbjct 151829605 CTCTTG-CTCAAA 151829594 Score = 219 bits (242), Expect = 7e-55 Identities = 166/193 (86%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| || |||||||||||||||| |||||| || |||||||||||||||||| Sbjct 151839877 CCTGTCTCAAGAAGGTCTAAACCCAGCTCCAGTTCCCAAT-AGTGGGTGAACAATCCAAG 151839935 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| |||||||||||| ||||||||||||| ||||| ||||||||||| ||| | Sbjct 151839936 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTGGACATGGAAGGATCAAATAGCTA 151839995 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 ||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||| Sbjct 151839996 TGTCCCTATGAAAGCTTGGCCTCCACAAGTCAGTTATCCCTGTGGTAACTTTTCTGACAC 151840055 Query 232 CTCTAGCCTCAAA 244 |||| | |||||| Sbjct 151840056 CTCTTG-CTCAAA 151840067 Score = 111 bits (122), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 10/181 (6%) Strand=Plus/Minus Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA------AGGATCAAAAAGCA--ACG 173 ||||||||| |||||||||||||| ||||| || |||||||||| | ||| Sbjct 65001255 TTCTGCTTCAA-ATGATAGGAAGAGCTGACATTGACATCAAAGGATCAAAAGTGACTACG 65001197 Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 | ||||||| | ||||||||||||||| || |||||||| |||||||||||| ||||| Sbjct 65001196 TTGCTATGAGCACTTGGCTGCCACAAGTCAAATATCCCTGCTGTAACTTTTCTGACACCT 65001137 Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | || | || | || |||||||| ||| | ||||||||| || ||||||| Sbjct 65001136 CCTGCTTAAAGCCCAAAAGGTTAAAAGGATCATGAGGTCGCACTTTCAT-GTCTGTATTC 65001078 Query 294 A 294 | Sbjct 65001077 A 65001077 >seq11 Length=59623150 Score = 241 bits (266), Expect = 2e-61 Identities = 153/166 (92%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115 ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 37457050 TCTGACGACGGTCTAAACCCAGCTCATGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 37456991 Query 116 ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTC 175 |||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| Sbjct 37456990 GGTGAATTCTGCTTCACAATGATAGGAAGAGCAGACATCGAAGGATCAAAAAGCGACGTC 37456931 Query 176 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 37456930 GCTATGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACT 37456885 >seq14 Length=152946536 Score = 232 bits (256), Expect = 1e-58 Identities = 163/185 (88%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 59659507 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 59659448 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 59659447 ACGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTTGGTGAACAATCCAACGCTTGGTG 59659388 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 59659387 AATTCTGCTTCACAGTGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 59659328 Query 180 TGAAC 184 ||||| Sbjct 59659327 TGAAC 59659323 >seq19 Length=126249303 Score = 221 bits (244), Expect = 2e-55 Identities = 164/194 (85%), Gaps = 12/194 (6%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 80402603 CCTGTCTCATGACGGTCTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAAC 80402544 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| ||||||||||| ||||||||||||||| ||||||||||||||||||| | Sbjct 80402543 GCTTGGTAAATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGTGA 80402484 Query 172 CGTCGCTATGAA------------CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 ||| ||||||| |||||||||||| |||||||| |||| ||||||||| Sbjct 80402483 GGTCTCTATGAACGTTCTTAAATGCGCTTGGCTGCCTCAAGCCAGATATCTCTGTGGTAA 80402424 Query 220 CTTTTCTGGCACCT 233 |||||||| || || Sbjct 80402423 CTTTTCTGACAACT 80402410 Score = 98.7 bits (108), Expect = 2e-18 Identities = 54/54 (100%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115298431 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 115298378 >seq10 Length=90668104 Score = 208 bits (230), Expect = 1e-51 Identities = 151/175 (86%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 31740295 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 31740354 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 31740355 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGC 31740414 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||||||| ||||||| Sbjct 31740415 TTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCATGGTCTGTATTC 31740469 >seq8 Length=97876770 Score = 170 bits (188), Expect = 3e-40 Identities = 109/119 (92%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| Sbjct 33692108 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACAGTCTAAACCCAGCTCACATTCCCTA 33692167 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||| |||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 33692168 TTAGTGCGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG 33692226 >seq15 Length=152823684 Score = 145 bits (160), Expect = 1e-32 Identities = 100/112 (89%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 86169266 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 86169325 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 86169326 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 86169377 >seq9 Length=94415995 Score = 143 bits (158), Expect = 5e-32 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||| ||||||||||||||||| || |||||||| |||| ||||||||||||||||||| Sbjct 19707340 GACATTGAAGGATCAAAAAGCAATGTGGCTATGAATGCTTAGCTGCCACAAGCCAGTTAT 19707281 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268 |||| ||||||||||||||||||||| || | ||| | || | ||||||| | Sbjct 19707280 CCCTATGGTAACTTTTCTGGCACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCCTGA 19707221 Query 269 GGCCACACTTTCATGGTTTGTATT 292 | | | ||||||||||||||||| Sbjct 19707220 AGTCCCGCTTTCATGGTTTGTATT 19707197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854353828224