Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq20 78.8 1e-12 >seq20 Length=148322235 Score = 78.8 bits (86), Expect = 1e-12 Identities = 79/101 (78%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||| ||||||| ||| ||||||||| ||||||| ||| |||| | |||| Sbjct 18761284 AAACCAATAAAATAGAACCGCG-GTCCTATTCCATTATTCTTAGCTGTGGTATCCAGGCG 18761226 Query 70 ---TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | |||||||||||||||||||||||| |||| ||||| Sbjct 18761225 GCTTGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 18761185 Score = 78.8 bits (86), Expect = 1e-12 Identities = 79/101 (78%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||| ||||||| ||| ||||||||| ||||||| ||| |||| | |||| Sbjct 18763476 AAACCAATAAAATAGAACCGCG-GTCCTATTCCATTATTCTTAGCTGTGGTATCCAGGCG 18763418 Query 70 ---TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | |||||||||||||||||||||||| |||| ||||| Sbjct 18763417 GCTTGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 18763377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595168840536