Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq14 152 1e-34
seq18 149 1e-33
seq1 109 1e-21
seq12 73.4 7e-11
>seq14
Length=152946536
Score = 152 bits (168), Expect = 1e-34
Identities = 193/259 (75%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 75068500 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 75068557
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC-CAACGAGTTCATC 189
|||||||||||||| | |||| |||||| | ||||||||| ||| || | || | |
Sbjct 75068558 ATGCCCTTAGATGTCCGGGGCTGCACGCCAGATACACTGACT-AGCTCAGCATGTGCCTA 75068616
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
|| || || ||| |||||| | | || | | ||||| |||| || | | |||
Sbjct 75068617 CACTATGCAGGCAGGCGCGGGTAACCCATTGAACCCCATTCGTGATGGGAATCGGGGATT 75068676
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
||||||||| | | |||||||||| || |||||| || ||||| ||| || |||||
Sbjct 75068677 GCAATTATTCCCCACGAACGAGGAATTCCCAGTAAGTGCAGGTCATAAGCTTGCATTGAT 75068736
Query 310 TACGTCCCTGCCCTTTGTA 328
|| ||||||||||||||||
Sbjct 75068737 TAAGTCCCTGCCCTTTGTA 75068755
>seq18
Length=130317789
Score = 149 bits (164), Expect = 1e-33
Identities = 175/230 (76%), Gaps = 5/230 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||| ||||| | ||| | |||| | ||| ||||| ||||||||||||||||
Sbjct 701286 CTTCTTAGCGGGACAAGTGGCATTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 701229
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||| |||||||||||||| | || || || | |
Sbjct 701228 ATGCCCTTAGATGTCCGGGGCTGCACACGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 701169
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATT 249
||| |||| ||| |||||| | ||||||| | | |||| ||||||| | | |||
Sbjct 701168 CCTACACCGGCAGGCGCGGGTAACCC-GTTAAACCCCATTCGTGATGGGGATCGGGGATT 701110
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299
||||||||| | | | |||||||||| || |||||| | | ||||| |||
Sbjct 701109 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGGGTCATAAGC 701060
>seq1
Length=198846266
Score = 109 bits (120), Expect = 1e-21
Identities = 129/171 (75%), Gaps = 3/171 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 55632031 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 55631974
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || | |
Sbjct 55631973 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 55631914
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241
||| ||||| ||| |||||| | | || | | ||||| |||||||
Sbjct 55631913 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGAT 55631863
Score = 98.7 bits (108), Expect = 2e-18
Identities = 110/143 (77%), Gaps = 3/143 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 55630111 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 55630054
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||||| |||||||||||| | || || || | |
Sbjct 55630053 ATGCCCTTAGATGTCCCGGGCTGCACGCACGCTACACTGACTGGCTCAGCGTGTGCCTAC 55629994
Query 191 CCTTGGCCGGAAGGTCTGGGTAA 213
||| ||||| ||| ||||||
Sbjct 55629993 CCTACGCCGGCAGGCACGGGTAA 55629971
>seq12
Length=182815943
Score = 73.4 bits (80), Expect = 7e-11
Identities = 78/100 (78%), Gaps = 5/100 (5%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||| | ||| ||| | || || | ||| || |||||||||||
Sbjct 25019979 CTTCTTAGAGGGACAAGTGGCGTTCAGTCACCTG--AGATAGAG-CAGTAACAGGTCTGA 25020035
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169
||||||||||||||| | |||| |||| |||||||||||
Sbjct 25020036 GATGCCCTTAGATGTCCAGGGCTGCACAGGCGCTACACTG 25020075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947148813312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |