Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq14 152 1e-34 seq18 149 1e-33 seq1 109 1e-21 seq12 73.4 7e-11 >seq14 Length=152946536 Score = 152 bits (168), Expect = 1e-34 Identities = 193/259 (75%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 75068500 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 75068557 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC-CAACGAGTTCATC 189 |||||||||||||| | |||| |||||| | ||||||||| ||| || | || | | Sbjct 75068558 ATGCCCTTAGATGTCCGGGGCTGCACGCCAGATACACTGACT-AGCTCAGCATGTGCCTA 75068616 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 || || || ||| |||||| | | || | | ||||| |||| || | | ||| Sbjct 75068617 CACTATGCAGGCAGGCGCGGGTAACCCATTGAACCCCATTCGTGATGGGAATCGGGGATT 75068676 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | |||||||||| || |||||| || ||||| ||| || ||||| Sbjct 75068677 GCAATTATTCCCCACGAACGAGGAATTCCCAGTAAGTGCAGGTCATAAGCTTGCATTGAT 75068736 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 75068737 TAAGTCCCTGCCCTTTGTA 75068755 >seq18 Length=130317789 Score = 149 bits (164), Expect = 1e-33 Identities = 175/230 (76%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||| ||||| | ||| | |||| | ||| ||||| |||||||||||||||| Sbjct 701286 CTTCTTAGCGGGACAAGTGGCATTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 701229 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||| |||||||||||||| | || || || | | Sbjct 701228 ATGCCCTTAGATGTCCGGGGCTGCACACGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 701169 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATT 249 ||| |||| ||| |||||| | ||||||| | | |||| ||||||| | | ||| Sbjct 701168 CCTACACCGGCAGGCGCGGGTAACCC-GTTAAACCCCATTCGTGATGGGGATCGGGGATT 701110 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 ||||||||| | | | |||||||||| || |||||| | | ||||| ||| Sbjct 701109 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGGGTCATAAGC 701060 >seq1 Length=198846266 Score = 109 bits (120), Expect = 1e-21 Identities = 129/171 (75%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 55632031 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 55631974 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 55631973 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 55631914 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 ||| ||||| ||| |||||| | | || | | ||||| ||||||| Sbjct 55631913 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGAT 55631863 Score = 98.7 bits (108), Expect = 2e-18 Identities = 110/143 (77%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 55630111 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 55630054 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||| |||||||||||| | || || || | | Sbjct 55630053 ATGCCCTTAGATGTCCCGGGCTGCACGCACGCTACACTGACTGGCTCAGCGTGTGCCTAC 55629994 Query 191 CCTTGGCCGGAAGGTCTGGGTAA 213 ||| ||||| ||| |||||| Sbjct 55629993 CCTACGCCGGCAGGCACGGGTAA 55629971 >seq12 Length=182815943 Score = 73.4 bits (80), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 5/100 (5%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| | ||| ||| | || || | ||| || ||||||||||| Sbjct 25019979 CTTCTTAGAGGGACAAGTGGCGTTCAGTCACCTG--AGATAGAG-CAGTAACAGGTCTGA 25020035 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 ||||||||||||||| | |||| |||| ||||||||||| Sbjct 25020036 GATGCCCTTAGATGTCCAGGGCTGCACAGGCGCTACACTG 25020075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947148813312