Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq1 95.1 2e-17
seq14 93.3 7e-17
seq2 75.2 2e-11
>seq1
Length=198846266
Score = 95.1 bits (104), Expect = 2e-17
Identities = 91/114 (80%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| ||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 100168014 GTACAAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 100167957
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| | |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 100167956 GGGGTGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 100167903
Score = 82.4 bits (90), Expect = 1e-13
Identities = 88/114 (77%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||| || | |||||| | ||||| | || | || |||| || || |
Sbjct 102539852 GTATGAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 102539795
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||||||||||||| |||||||| || | |||||||||||||||||||
Sbjct 102539794 GGGTCGAAGCTACCATCTGTGGGATTATGACTAAGCGCCTCTAAGTCAGAATCC 102539741
Score = 78.8 bits (86), Expect = 2e-12
Identities = 48/51 (94%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
|||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 169511338 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 169511288
>seq14
Length=152946536
Score = 93.3 bits (102), Expect = 7e-17
Identities = 88/110 (80%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| ||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 59659505 GTACAAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 59659562
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGA 110
| |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 59659563 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGA 59659612
>seq2
Length=131945496
Score = 75.2 bits (82), Expect = 2e-11
Identities = 67/84 (80%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||| | || | || |||| || || || | |||||||||| ||| ||||||||
Sbjct 40859117 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGGGAAGCTACCACCTGTGGGATTATGA 40859058
Query 91 CTGAACGCCTCTAAGTCAGAATCC 114
||||||||||||||||||||||||
Sbjct 40859057 CTGAACGCCTCTAAGTCAGAATCC 40859034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819157113856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |