Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq19 273 7e-71 seq18 136 1e-29 seq1480 116 1e-23 >seq19 Length=126249303 Score = 273 bits (302), Expect = 7e-71 Identities = 390/535 (73%), Gaps = 43/535 (8%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || ||| |||| ||||||| ||||| ||||||| ||||| Sbjct 115117560 ACTCATTCCAATTACAGGGCCTCAAGAGAGTCCTGTATTGTTATTTTTTGTCACAACCTC 115117501 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||| ||| |||||||||||| | |||||||||||||||||| |||||||| | || Sbjct 115117500 CCCAAGTCAGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGACGTGGTAGCTGGTT 115117441 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||||| |||| ||||||| |||| |||| |||||| | | |||||||| Sbjct 115117440 CTCAGGCTCCCTCTCCAGAATGGAACCCTGATTCACCGTCACCCGTGGTCAACATGGTAG 115117381 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 | || | | |||||| || || |||||||||| || |||| | || || || | Sbjct 115117380 G---CTCTACGACCATCTTAAATTAATAGGGCAGACGTTCAAATGGGTCGTCACCAGCAC 115117324 Query 242 AAG-GCCATGCGA--TTCGTTAAGTTATTATGAATCACCAAGG-----AGCCCC----GA 289 | | | || | || | | | ||||| || | ||| | | |||||| | Sbjct 115117323 AGGAGGCAAGAGATCTGCCCAAGGTTATCTGGAGTTACCTACGCCCCCAGCCCCCCCACA 115117264 Query 290 AGGGCGTTGGTTTTTTATCTAATAAATACAC--------CCCTTCC---GA--AGTCGGG 336 | ||||| |||| || |||||| ||| |||| || || ||| Sbjct 115117263 GCCGGGTTGG--TTTTCACTGATAAATGCACAAGCATCTCCCTGCCCGGGATGGGTCAAC 115117206 Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTAC---- 391 | |||||| |||||||||||||| |||| ||||||| | || | ||| | Sbjct 115117205 ACCCTCAGCATGGATTAGCTCTAGAATGTCCACAGTTATCCGAGCAGGAGAGGGGCGAGT 115117146 Query 392 TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAG-ATTGC 449 | |||| ||| |||||||||||||||||||||| ||||||||||||| || ||| Sbjct 115117145 GACCAAAAGAACCATAACTGATTTAATGAGCCATT--CAGTTTCACTGTACCAGCCGTGC 115117088 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||| |||| |||||||||||||||||||||||||| | |||||||||| Sbjct 115117087 --AGACTTAGCCATGTATGGCTTAATCTTTGAGACAAGCATACG-CTACTGGCAG 115117036 >seq18 Length=130317789 Score = 136 bits (150), Expect = 1e-29 Identities = 97/110 (88%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||||||||| ||||||||||||| | | || || Sbjct 43400614 CAAAGGAACCATAACTGATTTAATGAGCCATTCTCAGTTTCACTGTACCGGCCGTTTGTA 43400555 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 43400554 CTTAGACATGCATGGCTTAATCTTTGACACAAGCATATG-CTACTGGCAG 43400506 Score = 102 bits (112), Expect = 2e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 134 CTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTA 193 ||||||||||||||||| ||||||||| |||||| | |||||||||||| ||| Sbjct 43401079 CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTA 43401020 Query 194 CCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 ||||||||||||||||||||||| || ||||| | |||||| Sbjct 43401019 CCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCG 43400976 >seq1480 Length=50479 Score = 116 bits (128), Expect = 1e-23 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 52 TCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG 111 ||||||| |||| | ||| ||| |||||||||||| ||||||||||||||||||||||| Sbjct 3855 TCACTACTTCCCTGGGTCAGGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTGGATGTG 3796 Query 112 GTAGCCGTTTCTCAGGCTCCCTCTCC-GGAA 141 |||||| ||||||||| ||||||||| |||| Sbjct 3795 GTAGCCTTTTCTCAGGATCCCTCTCCTGGAA 3765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510318377984