Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq19 273 7e-71
seq18 136 1e-29
seq1480 116 1e-23
>seq19
Length=126249303
Score = 273 bits (302), Expect = 7e-71
Identities = 390/535 (73%), Gaps = 43/535 (8%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || ||| |||| ||||||| ||||| ||||||| |||||
Sbjct 115117560 ACTCATTCCAATTACAGGGCCTCAAGAGAGTCCTGTATTGTTATTTTTTGTCACAACCTC 115117501
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
||| ||| ||| |||||||||||| | |||||||||||||||||| |||||||| | ||
Sbjct 115117500 CCCAAGTCAGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGACGTGGTAGCTGGTT 115117441
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|||||||||||||||| |||| ||||||| |||| |||| |||||| | | ||||||||
Sbjct 115117440 CTCAGGCTCCCTCTCCAGAATGGAACCCTGATTCACCGTCACCCGTGGTCAACATGGTAG 115117381
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
| || | | |||||| || || |||||||||| || |||| | || || || |
Sbjct 115117380 G---CTCTACGACCATCTTAAATTAATAGGGCAGACGTTCAAATGGGTCGTCACCAGCAC 115117324
Query 242 AAG-GCCATGCGA--TTCGTTAAGTTATTATGAATCACCAAGG-----AGCCCC----GA 289
| | | || | || | | | ||||| || | ||| | | |||||| |
Sbjct 115117323 AGGAGGCAAGAGATCTGCCCAAGGTTATCTGGAGTTACCTACGCCCCCAGCCCCCCCACA 115117264
Query 290 AGGGCGTTGGTTTTTTATCTAATAAATACAC--------CCCTTCC---GA--AGTCGGG 336
| ||||| |||| || |||||| ||| |||| || || |||
Sbjct 115117263 GCCGGGTTGG--TTTTCACTGATAAATGCACAAGCATCTCCCTGCCCGGGATGGGTCAAC 115117206
Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTAC---- 391
| |||||| |||||||||||||| |||| ||||||| | || | ||| |
Sbjct 115117205 ACCCTCAGCATGGATTAGCTCTAGAATGTCCACAGTTATCCGAGCAGGAGAGGGGCGAGT 115117146
Query 392 TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAG-ATTGC 449
| |||| ||| |||||||||||||||||||||| ||||||||||||| || |||
Sbjct 115117145 GACCAAAAGAACCATAACTGATTTAATGAGCCATT--CAGTTTCACTGTACCAGCCGTGC 115117088
Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
| |||||| |||| |||||||||||||||||||||||||| | ||||||||||
Sbjct 115117087 --AGACTTAGCCATGTATGGCTTAATCTTTGAGACAAGCATACG-CTACTGGCAG 115117036
>seq18
Length=130317789
Score = 136 bits (150), Expect = 1e-29
Identities = 97/110 (88%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| ||||||||||||||||||||||| ||||||||||||| | | || ||
Sbjct 43400614 CAAAGGAACCATAACTGATTTAATGAGCCATTCTCAGTTTCACTGTACCGGCCGTTTGTA 43400555
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 43400554 CTTAGACATGCATGGCTTAATCTTTGACACAAGCATATG-CTACTGGCAG 43400506
Score = 102 bits (112), Expect = 2e-19
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 134 CTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTA 193
||||||||||||||||| ||||||||| |||||| | |||||||||||| |||
Sbjct 43401079 CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTA 43401020
Query 194 CCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237
||||||||||||||||||||||| || ||||| | ||||||
Sbjct 43401019 CCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCG 43400976
>seq1480
Length=50479
Score = 116 bits (128), Expect = 1e-23
Identities = 81/91 (89%), Gaps = 1/91 (1%)
Strand=Plus/Minus
Query 52 TCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG 111
||||||| |||| | ||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct 3855 TCACTACTTCCCTGGGTCAGGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTGGATGTG 3796
Query 112 GTAGCCGTTTCTCAGGCTCCCTCTCC-GGAA 141
|||||| ||||||||| ||||||||| ||||
Sbjct 3795 GTAGCCTTTTCTCAGGATCCCTCTCCTGGAA 3765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510318377984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |