Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3385 158 1e-33 seq17 111 1e-19 seq7 102 6e-17 seq4 86.0 5e-12 >seq3385 Length=62036 Score = 158 bits (174), Expect = 1e-33 Identities = 386/577 (67%), Gaps = 10/577 (2%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 || || ||| ||||| ||||| ||| | ||||| || | || || || |||||| Sbjct 20094 TTTCCAATCCAGTATCCTGATATCTGGAGAATGTATAAGCAAGCACGGGCATCTTTCTGG 20153 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA---GCGTTTATCGAGC 61182 || | || ||||| || ||||| || ||| | | ||||| | || | ||| | Sbjct 20154 ACAGAAGAAGAGGTTGACTTGTCAAAGGACCTCCCTCACTGGAACAAGCTTAAATCCGAC 20213 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 | ||| || || | |||| | | || || ||||| || || || || || Sbjct 20214 GA-GAAGTACTTTATCTCCCACATCT--TAGCCTTTTTTGCAGCCAGTGATGGAATTGTA 20270 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||||| || || |||| ||||| ||||||||||| || ||||| | | || ||| Sbjct 20271 AATGAAAACTTGGTGGAGCGTTTTAGTCAGGAGGTGCAGGTTCCGGAGACTCACTGCTTC 20330 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 || ||||| |||||| ||| |||||||| ||||| |||||||||||| | || || || Sbjct 20331 TATGGCTTTCAGATTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTACTAATAGAC 20390 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 || |||||||| || | | || | ||| || || || || || || || || || Sbjct 20391 ACTTACATCAGAGATCCAAAGAAAAGGGAATTTTTATTTAACGCAATTGAAACAATGCCA 20450 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAG-TACAACGGCTACATT 61481 || ||| |||||||| ||||| | ||||| | ||| || | |||| || Sbjct 20451 TATGTTAAGAAAAAAGCGGACTGGGCTCTGCGCTGGAT-AGCAGATAGGAAATCTACTTT 20509 Query 61482 TGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGC 61541 ||| ||| || || |||| ||||| | || || || | | ||| |||||| ||||| Sbjct 20510 TGGGGAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGATCATTTGC 20569 Query 61542 CGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTT 61601 ||||| || ||| | ||||| | || || ||||| | ||||| || ||||| | Sbjct 20570 TGCAATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGAACTGACTTTTTCAAATGAACT 20629 Query 61602 GAT-ATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||| | || | || || || | || ||||| ||||| Sbjct 20630 GATCAGCA-GGGATGAAGGTCTTCACTGTGACTTTGC 20665 >seq17 Length=136257712 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| || ||||| || ||||| ||||| |||| ||||| || Sbjct 91852711 GGTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTAATGGTTCCCAGGTTCTGCTG 91852652 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || || || | ||| ||||| | |||||| || ||||||||||| || Sbjct 91852651 GTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCGGTCTCCGTCTG 91852592 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||||||||||||| | |||||| Sbjct 91852591 GGACTCAATGATGGCATACCAAAG 91852568 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || ||||||||||||||||||| || || || | Sbjct 91850556 CATGAAGAGATCTGGGATCCAAAGTGCAAAGAAGAGATCGCGTGCTCGCTGTTCTTCCTT 91850497 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||| ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 91850496 GCCTGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 91850438 Query 66459 AGATGGCGAACGAGCC 66474 | || || |||| ||| Sbjct 91850437 AAATAGCAAACGCGCC 91850422 >seq7 Length=104786220 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| ||||| ||||||||||| || | ||||| || || ||||| ||||| |||| Sbjct 35883116 TGGAGCGTTTTAGTCAGGAGGTGCAGGTTCCAGAGGCTCGCTGCTTCTATGGCTTTCAGA 35883057 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| ||||| |||||||||||| | || || || || |||||||| | Sbjct 35883056 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCAGAG 35882997 Query 61376 A 61376 | Sbjct 35882996 A 35882996 >seq4 Length=114123490 Score = 86.0 bits (94), Expect = 5e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || || || || ||||| | ||||| || |||||||| |||||||| Sbjct 16581522 TGGAGCGATTTAGC-CAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAA 16581580 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||||||||||| || | ||||| || ||||||||| | || || || || ||||| Sbjct 16581581 ATTGCCATGGAAAACATACACTCTGAAATGTACAGTCTCCTTATTGACACTTACAT 16581636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397541815674560