Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq290542 80.6 4e-13 seq125149 77.0 5e-12 >seq290542 Length=299 Score = 80.6 bits (88), Expect = 4e-13 Identities = 81/103 (79%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||||||| || ||||||| || ||| |||| ||| |||||| |||||| | Sbjct 129 GTACAAAGGACAGGGACTTAATCAACGCAAGTTTG-TGACCCGCACTTACTGGGAATT-C 186 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 ||| || | | || ||||||||| | | ||||||||||| Sbjct 187 CTCATTTATGGGGAAGAATTGCAATCCCCAAGCCCCATCACGA 229 >seq125149 Length=8806 Score = 77.0 bits (84), Expect = 5e-12 Identities = 79/101 (78%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| ||||| | | |||||| |||| ||| Sbjct 771 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCCACACTTACTGGGAA-TTC 714 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC 101 ||| || | | || ||||||||| || | |||||||| Sbjct 713 CTCATTCATGGGGAAGAATTGCAATCCTCGACTCCCATCAC 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 749324642030