Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq29242 140 6e-31 seq182383 136 7e-30 >seq29242 Length=106423 Score = 140 bits (154), Expect = 6e-31 Identities = 176/237 (74%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 79 TTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG-CTC--GAATACATTAGCATGGAAT 135 |||||||||||||||||||||||||||||||| | ||| | |||| | | ||||| Sbjct 106104 TTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGAGCCTCCTGGATACCACAACTAGGAAT 106045 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 ||| ||||||||| |||||||||||||||||||||| | ||| | |||||||| | Sbjct 106044 AATGGAATAGGAC-TGCGGTTCTATTTTGTTGGTTTTCGGAACCTAGGCCATGATTAAGA 105986 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 ||||||| || || | |||| | ||||||| ||||||| || || || Sbjct 105985 GGGATAGCTGGTGGCATTCATATTGCACCACTAGAGGTGGAATTCTTTGACCAATGCAAA 105926 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || | || ||||| || ||||| |||| ||||||||||| ||| |||||| Sbjct 105925 ACAGACCAGAGCAAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAATGAAAGT 105870 >seq182383 Length=6987 Score = 136 bits (150), Expect = 7e-30 Identities = 176/238 (74%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 79 TTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCT--CGA-ATACATTAGCATGGAAT 135 |||||||||||||||||||||||||||||||| || | | |||| ||| ||||| Sbjct 716 TTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGAGCCACCTAGATACCACAGCTAGGAAT 657 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 ||| ||||||||| ||||||||||||||||| || | || | |||||||| | Sbjct 656 AATGGAATAGGACCA-CGGTTCTATTTTGTTGGCTTTCGGAACTGAGACCATGATTAAGA 598 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 ||||| | |||||| | ||||| | ||||||||||||||| || | || Sbjct 597 GGGATGGCCGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACTGGGGCAAA 538 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 || || | || ||||| || ||||| |||||||||||||||| ||| ||||||| Sbjct 537 ACGGACCAGAGCAAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGTT 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911839001216