Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq8042 98.7 4e-18 seq315 93.3 2e-16 seq26125 89.7 2e-15 seq1017 82.4 3e-13 >seq8042 Length=1268535 Score = 98.7 bits (108), Expect = 4e-18 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| |||||| ||||||| |||| ||||||| ||| |||||||||||||| ||||| Sbjct 1237338 GTTAGGACCCAAAAGATGTTGAATGATGCCTGGGCAGGACGAAGCCAGAGGAAAATCTGG 1237279 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||| | |||||| ||| ||||||||| || || | ||||||||||||| Sbjct 1237278 TGGAGGTCCATAGCGGTCCTGATGTGCAAATCTGTCATCCGACCTGGGTATAGGGGC 1237222 >seq315 Length=167951 Score = 93.3 bits (102), Expect = 2e-16 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||||||||||||||||||||||||||| | || || |||||||||| |||||| Sbjct 55950 GTTAGGACCCGAAAGATGGTGAACTATGCCTCAGCTCGGCGAGGCCAGAGGAATCTCTGG 56009 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||| || | || ||| ||| ||||||||| | ||| | |||||||||| Sbjct 56010 TGGCGGTCCTTAGAGGTCCTGACGTGCAAATTTGTTGTCCGACCTGGGTATAGG 56063 >seq26125 Length=210044 Score = 89.7 bits (98), Expect = 2e-15 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||| || |||| |||| ||||||||| | |||| |||||| ||||||||||| | Sbjct 2224 GTTAGGATCCAAAAGCTGGTCAACTATGCCAGGGCAGGGCGAAGCCGGAGGAAACTCTAG 2283 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||| | ||| ||| ||| | |||||||| ||||| | |||||| ||||| || Sbjct 2284 TGTAGGTCCACAGTGGTCCTGACATGCAAATCAGTCGTCCGACCTGGGTACAGGGGTGA 2342 >seq1017 Length=419670 Score = 82.4 bits (90), Expect = 3e-13 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||||||| ||||||||||||||| ||| ||| | ||||||||||||||||||| Sbjct 25882 GTTAGGACCCGGGAGATGGTGAACTATGTCTGGGCAGGTTAAAGCCAGAGGAAACTCTGG 25941 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 |||||| | || | | ||| ||||||| | || | | ||||||||| Sbjct 25942 TGGAGGTCCATAGAGCTCCTGATGTGCAAACCTGTCATTCGACCTGGGTATAG 25994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2072122659100