Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq76883 105 3e-21 seq23549 89.7 2e-16 >seq76883 Length=4790 Score = 105 bits (116), Expect = 3e-21 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 5 AAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGA 64 |||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| Sbjct 188 AAGAAACTAACCAGGATTTCCTCAGTAATGCTGAGTGAACAGGGAAGAGCCCAGCGCCGA 247 Query 65 ATCCCCGC 72 |||||||| Sbjct 248 ATCCCCGC 255 >seq23549 Length=204559 Score = 89.7 bits (98), Expect = 2e-16 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGC 61 ||||||||||||||||||||||| || ||||| | || |||||||| |||||||||| || Sbjct 25108 GAAAAGAAACTAACCAGGATTCCTTCTGTAACAGTGAATGAACAGGAAAGAGCCCAGGGC 25167 Query 62 CGAATCCCCGCC 73 | |||||| ||| Sbjct 25168 CAAATCCCTGCC 25179 Score = 80.6 bits (88), Expect = 1e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58 ||||||||||||||||||||||| || ||||| | ||||||||||| |||||||||| Sbjct 24912 GAAAAGAAACTAACCAGGATTCCTTCTGTAACAGTGAGTGAACAGGAAAGAGCCCAG 24968 Score = 80.6 bits (88), Expect = 1e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58 ||||||||||||||||||||||| || ||||| | ||||||||||| |||||||||| Sbjct 25010 GAAAAGAAACTAACCAGGATTCCTTCTGTAACAGTGAGTGAACAGGAAAGAGCCCAG 25066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229606757280