Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq182383 163 5e-38 seq4723 105 1e-20 seq4289 78.8 1e-12 >seq182383 Length=6987 Score = 163 bits (180), Expect = 5e-38 Identities = 178/230 (77%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 36 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAG 95 |||||| |||||||||||||||||||||||||||| | || | || | |||||| | | Sbjct 4 CCCAGA-CATCTAAGGGCATCACAGACCTGTTATTAC-TCTATCT-CGGGTGGCTGAATG 60 Query 96 CCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-TAGTCGATGGGG---CTATTTA 148 ||| | |||||||||||||| | | | ||| | | ||| | ||| ||| Sbjct 61 CCACTTGTCCCTCTAAGAAGTTGGGGGACGCTGACCGCTCGGGGATCACGTAACTAGTTA 120 Query 149 GCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGA 208 ||| | | |||| || ||||| ||||||||||||||||||| ||||||||||||||| Sbjct 121 GCATGCCAGAGTCTAATTTGTTATTGGAATTAACCAGACAAATCCCTCCACCAACTAAGA 180 Query 209 ACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | || |||||||||||| ||| |||||| |||| |||||||| ||||||| Sbjct 181 AAGGTCATGCACCACCATCCACAGAATCGAGAATGAGCTATCGATCTGTC 230 >seq4723 Length=630251 Score = 105 bits (116), Expect = 1e-20 Identities = 160/221 (72%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| |||||| |||| |||||||||||||||||||||| ||||||| | Sbjct 399326 TCAGTGTAGCATGCGTGCAGCCCCAGACATCTAAGGGCATCACAGACCCGTTATTGTTT- 399268 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAAC--CAT 130 || ||| | ||| | | | | |||||||||||||| | | || | Sbjct 399267 AATCTTGGGTAT-CTGAACGTTACTTGTCCCTCTAAGAAGTTGGGGGATGCTGACTGCTC 399209 Query 131 AGTCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || | ||| || || | | |||||||| ||| ||||||||||||| | Sbjct 399208 AGGGGTTGCGTAACTAGTTGACATGCCAGAGTCTCGTTTATTAAGGGAATTAACCAGATA 399149 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 |||||||| ||||| ||||||||||||||||||| |||||| Sbjct 399148 AATCACTCAACCAA-TAAGAACGGCCATGCACCATCACCCA 399109 >seq4289 Length=761232 Score = 78.8 bits (86), Expect = 1e-12 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 26 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT 85 || ||||| |||| ||||||||||||| |||||||||||||||| |||| | || Sbjct 415697 GCACGTGCAGCCCCAGACATCTAAGGGCACCACAGACCTGTTATTG-TTCAATC-TCGGG 415640 Query 86 TGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||||| | |||| | |||||||||||||| Sbjct 415639 TGGCTGAATGCCACTCGTCCCTCTAAGAAG 415610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793965259002