Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq29242 91.5 2e-16 seq182383 80.6 3e-13 >seq29242 Length=106423 Score = 91.5 bits (100), Expect = 2e-16 Identities = 80/96 (83%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 18 TTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG-CTC--GAATACATTACCATGGAAT 74 |||||||||||||||| ||||||||||||||| | ||| | |||| | | ||||| Sbjct 106104 TTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGAGCCTCCTGGATACCACAACTAGGAAT 106045 Query 75 AATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||| ||||||||| |||||||||||||||| ||||| Sbjct 106044 AATGGAATAGGAC-TGCGGTTCTATTTTGTTGGTTT 106010 >seq182383 Length=6987 Score = 80.6 bits (88), Expect = 3e-13 Identities = 126/174 (72%), Gaps = 11/174 (6%) Strand=Plus/Minus Query 18 TTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC--TCGA-ATACATTACCATGGAAT 74 |||||||||||||||| ||||||||||||||| || | | |||| | | ||||| Sbjct 716 TTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGAGCCACCTAGATACCACAGCTAGGAAT 657 Query 75 AATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACC---GCCCGTAATGATA 131 ||| ||||||||| |||||||||||||| || || | ||| | | || ||||| Sbjct 656 AATGGAATAGGAC-CACGGTTCTATTTTGTTGGCTT-TCGGAACTGAGACC---ATGATT 602 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | |||| | |||||| | ||||| | | ||||||||||||| || Sbjct 601 AAGAGGGATGGCCGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGA 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510178479680