Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq16079 104 4e-20 seq290542 86.0 1e-14 seq125149 82.4 1e-13 >seq16079 Length=225847 Score = 104 bits (114), Expect = 4e-20 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||| ||||| |||||||||| ||||||||| ||||||||| ||| ||||| || || Sbjct 59537 AAGATTGAG-CAATAACAGGCCTGTGATGCTCTTAGATGTCTGGGGTTGCACGTGCACTG 59595 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 ||||||| | || | || | ||| ||| | ||| ||||||||| ||| ||| Sbjct 59596 CACTGACTGGCTCAGCATGTGTCTACCCTATGCCAGTAGGCGTGGGTAATC-CGTTGAAC 59654 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 | || | ||||||| | || ||| |||| | | | |||| ||||| || ||||| Sbjct 59655 CCATTCTGGATGGGGATCATGGGTTCCAACTATTCCCCATGAACGTGGAATTCCCAGTAA 59714 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | || ||||| ||| | || |||| ||||||| ||| |||| Sbjct 59715 GTACGGGTCATAAGCTTGTATTTATTAAGTCCCTGTCCTCTGTA 59758 >seq290542 Length=299 Score = 86.0 bits (94), Expect = 1e-14 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 159 GCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTG 218 ||||||||||||| | || | || | | ||| | || ||| | ||||| | Sbjct 299 GCGCTACACTGACTGGCTCAGCATGTGCCTACCCTCCCCAGGCAGGCATAGGTAACCCGT 240 Query 219 TTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 278 | |||| | ||||| ||||| | | | ||||||||| || | | | || ||||||| || Sbjct 239 TGAAACCCATTCGTGATGGGGCTTGGGGATTGCAATTCTTCCCCATAAATGAGGAATTCC 180 Query 279 TAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| ||| |||| | | |||||||||| ||||||| |||||||| Sbjct 179 CAGTAAGTGCGGGTCACAAACTTGCGTTGATTAAGTCCCTGTCCTTTGTA 130 >seq125149 Length=8806 Score = 82.4 bits (90), Expect = 1e-13 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 ||| |||| | ||| ||||||||| || | | | || ||||||| || |||||| | | Sbjct 673 GTGATGGGAGTCGAGGATTGCAATTCTTCCCCATGAATGAGGAATTCCCAGTAAGTGTGG 732 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||| || ||||||| |||||||||||||||| Sbjct 733 GTCATAAGCTTGCATTGATTAAGTCCCTGCCCTTTGTA 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943721483776