Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2526 203 1e-49 seq8269 188 2e-45 seq335939 127 7e-27 seq13687 96.9 1e-17 seq1610 96.9 1e-17 seq23133 84.2 7e-14 seq29809 78.8 3e-12 >seq2526 Length=1625914 Score = 203 bits (224), Expect = 1e-49 Identities = 138/155 (89%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438 |||||||| |||||||| ||||||||||||| ||||||| |||||||||||| ||||||| Sbjct 1093658 ATCTCGTTTATCCATTCTTGCGCGTCACTAACTAGATGATGAGGCATTTGGCAACCTTAA 1093717 Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 ||||||| |||||||||| ||| ||||||| |||| ||||||||||||||| |||||| Sbjct 1093718 GAGAGTCGTAGTTACTCCTGCCATTTACCCCTGCTTCATTGAATTTCTTCACTCTGACAT 1093777 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||| || ||| |||||||| Sbjct 1093778 TCAGAGCACTGGGCAGAATTCGCATCTCGTCAACA 1093812 >seq8269 Length=633083 Score = 188 bits (208), Expect = 2e-45 Identities = 216/297 (73%), Gaps = 44/297 (15%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| ||| ||||||||||||| ||| | | | |||||||||||||| ||| Sbjct 319897 CTCCCACTTACTCTTCACCTCTCAAGTCTCTTCCCGGTGGCAGACTAGAGTCAAGCCCAA 319838 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||| ||| |||||| | ||| ||| || ||||||||| |||||||||||| | Sbjct 319837 CAGGGTCCTCTA-CCCCGCCTA---CGC-AAGTCCATTCCCTTGGTTGTGGTTTCGCTGG 319783 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 | || |||||||||||| |||||||||| | |||| |||||||| |||| Sbjct 319782 ACAGAAGATAGGGACAGGGGGAATCTCGCTCATCCGCTCATGCGCATCAC---------- 319733 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||| ||||||| |||| |||||||| Sbjct 319732 -------------------TAAGAGAG----------TCCCGCCATTTATCCGCGCTTCA 319702 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 319701 CGGAATTTCTTCACTTCGACATTCAGAGCACTGGGCAGAAATCACACGGCCTCAACA 319645 >seq335939 Length=559 Score = 127 bits (140), Expect = 7e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||| |||||||||||||| ||||||| |||||| | |||||||| || ||| Sbjct 436 GACTAGAGTCAAACTCAACAGGGTCTTGTTTCCCCACTGATTTCACCAAGCCCATTACCT 495 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||||||||| || |||||||| ||||||||| Sbjct 496 TGGCTGTGGTTTCACTGGATAGTAGGTAGGGACAG 530 >seq13687 Length=47829 Score = 96.9 bits (106), Expect = 1e-17 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 ||||||||||| |||| |||| |||| ||||||| | | | ||||||| || || || Sbjct 45597 TAATTAGATGATGAGGTATTTTACTACACTAAGAGAATAACACTTACTCCTACCTTTGAC 45538 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 || | ||| |||||||||||||||| |||| || ||| || |||||||| ||||| Sbjct 45537 CCACTCTTAATTGAATTTCTTCACTTCAACATCCATAGCTGTGAGCAGAAATAACATTCT 45478 Query 527 GTCAAC 532 ||| || Sbjct 45477 GTCTAC 45472 >seq1610 Length=1094818 Score = 96.9 bits (106), Expect = 1e-17 Identities = 87/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGC-GTTAT 65 ||| ||||| | |||| ||||||| |||| |||| | ||||||||||| ||| |||| Sbjct 1030481 CTTCTGCTCCATGGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACTTGCCGTTAC 1030540 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||||||| || |||||| ||||||||||||||| || |||| Sbjct 1030541 CCTTTGACAGATGTACCACCCCAGTCAAACTCCCCACCTGGCACTGTC 1030588 >seq23133 Length=170387 Score = 84.2 bits (92), Expect = 7e-14 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || || |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 152227 AACTTTTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 152174 >seq29809 Length=1929 Score = 78.8 bits (86), Expect = 3e-12 Identities = 61/72 (85%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||||||||||||||||| ||| || || | | |||||||||||||||| Sbjct 1861 GGCTCCCACTTATTCTACACCTCT---GTCTCTTTACCGTGCCAGACTAGAGTCAAGCTC 1917 Query 295 AACAGGGTCTTC 306 |||||||||||| Sbjct 1918 AACAGGGTCTTC 1929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1629194858816