Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq182383 268 3e-69 seq4316 131 5e-28 seq55715 127 6e-27 seq336 111 5e-22 >seq182383 Length=6987 Score = 268 bits (296), Expect = 3e-69 Identities = 349/475 (73%), Gaps = 41/475 (9%) Strand=Plus/Plus Query 50 TGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATG 109 ||||||||||||||| ||||||| ||||||||| || | |||||||||||||||||| | Sbjct 1190 TGTCACTACCTCCCCA-GTCGGGAGTGGGTAATTCGCACACCTGCTGCCTTCCTTGGAGG 1248 Query 110 TGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTG 169 |||||| ||||||||| |||||||||| |||||||||| | ||||||| | ||||| || Sbjct 1249 TGGTAGTTGTTTCTCAGTCTCCCTCTCCAGAATCGAACCATGATTCCCCATCACCCG-TG 1307 Query 170 AT-ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAA 228 || |||||||||||| | ||||||| |||||||||||||||||| || ||||| Sbjct 1308 ATCACCATGGTAGGCACAGAAACTACCATGGAAAGTTGATAGGGCAGACGTTCGAATGGG 1367 Query 229 CCATCGCCG--GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCC 286 |||||| | | ||| ||||| | | |||||||| Sbjct 1368 TTGTCGCCGCTGGTGCCCGCCCTGCGACCGGGT----------------CCAAGGAGGAT 1411 Query 287 CGAAGGGCGTTGGTTTTTTATCTAATAAATACA--------CCCCTTCCGAAGTCGG-GG 337 | | | ||||| |||| |||| |||||| || |||| ||| | || || Sbjct 1412 CTCACTGGGTTGG-TTTTGATCTGATAAATGCATGTGTCCCCCCCAAGCGAGGGGGGCGG 1470 Query 338 T---TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AG----GT 389 | | ||||||||| ||||||||||||||| |||||||| |||| | || | Sbjct 1471 TGCCCGTCGGCATGTATTCACTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGAGA 1530 Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 || | |||| | | ||||||| |||||||||||||| ||||||||| |||| || Sbjct 1531 ACAACCAAAAGACCCATAACTGGTTTAATGAGCCATTTGCAGTTTCATTGTACCTGCTGT 1590 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||| ||||||||||||||||||||||| ||||| |||||| ||| Sbjct 1591 GTGTACTTAGACATTCATGGCTTAATCTTTGAGACAAG-ATATG-CTACTGACAG 1643 >seq4316 Length=1185565 Score = 131 bits (144), Expect = 5e-28 Identities = 92/104 (88%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 34 CTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTG 93 |||||| ||||| |||||||||| |||| | || |||| ||||||||||| ||||||| Sbjct 178832 CTGTATTGTTATTTTTTGTCACTACTTCCCTGGGTTGGGAGTGGGTAATTTGTGCGCCTG 178891 Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 ||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 178892 CTGCCTTCCTT-GATGCGGTAGCCGTTTCTCAGGCTCCCTCTCC 178934 >seq55715 Length=3713 Score = 127 bits (140), Expect = 6e-27 Identities = 95/110 (86%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||||| ||||||||||||| |||||||||||||||| | | || Sbjct 3649 CAAAGGAACCATAACTAATTTAATGAGCCACTCGCAGTTTCACTGTACCGGCCGTGCGTA 3590 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3589 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 3541 >seq336 Length=1885403 Score = 111 bits (122), Expect = 5e-22 Identities = 89/106 (84%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 |||||| ||| |||| |||||||||||| | || |||||||||||||| | || | Sbjct 61523 ATCAAAGGAACCATAATTGATTTAATGAGTCTTTTGCAGTTTCACTGTACTGGTTATGCA 61464 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 498 |||||||||||||| ||||||||||||||||||||| |||| |||| Sbjct 61463 TACTTAGACATGCAAGGCTTAATCTTTGAGACAAGCGTATG-CTAC 61419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1504853176832