Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5156 120 2e-22 seq53448 102 6e-17 seq15565 91.5 1e-13 >seq5156 Length=389234 Score = 120 bits (132), Expect = 2e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || ||||| || ||||| |||||||||| ||||| || Sbjct 241814 GGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTG 241873 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| ||||| ||||| || Sbjct 241874 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCTGTCTCTGTCTG 241933 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 241934 AGACTCAATGATGGCATACCAAAG 241957 Score = 93.3 bits (102), Expect = 3e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| || || || ||||| ||||| |||||||||| || ||||| ||||| || | Sbjct 243604 CATAAAGAGGTCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCGCTGCTCTTCCTT 243663 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 243664 CCCTGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 243722 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 243723 AAATAGCAAA 243732 >seq53448 Length=237101 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| ||| || |||||||| || | ||||| || |||||||| ||||| || | Sbjct 202915 TGGAACGGTTCAGTCAAGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAA 202974 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| ||||| |||||||| |||||||||||| | || || || || |||||| ||| Sbjct 202975 TTCTCATCGAGAACGTCCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCCGGG 203034 Query 61376 A 61376 | Sbjct 203035 A 203035 >seq15565 Length=372695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| ||| | || ||| ||||| || || ||||| | || |||||||| || | | Sbjct 363678 ATGAGCCCTTGCTGAGAGAAAATCCCCGCCGCTTCGTTATCTTTCCCATCGAATACCATG 363737 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| |||||||| || | || || ||||||||||||| |||||||| || Sbjct 363738 ATATCTGGCAGATGTACAAGAAAACCGAGGCCTCCTTCTGGACGGCTGAGGAGGTGGACC 363797 Query 61145 TGTCCAAAGACATGAATGACTGGGA 61169 | ||||| ||||| | ||||||| Sbjct 363798 TTTCCAAGGACATTCAACACTGGGA 363822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395788580302880