Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq7888 118 4e-24 seq22039 116 2e-23 seq31172 98.7 4e-18 seq28135 91.5 6e-16 seq27888 86.0 3e-14 >seq7888 Length=1401756 Score = 118 bits (130), Expect = 4e-24 Identities = 108/135 (80%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | || || |||||||||||||||||||||||||||| | |||| |||| Sbjct 153109 GAGCAGGAGCACA-CTCTTAGGACCCGAAAGATGGTGAACTATGCCTGCACAGGGCGAAG 153167 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||| |||||||||||||||| | || ||| ||| |||||||||| || | | Sbjct 153168 CCAGATGAAACTCTGGTGGAGGTCTGTAGTGGTCCTGACGTGCAAATCTGTCACCCGACA 153227 Query 669 TGGGTATAGGGGCGA 683 |||||| ||||| || Sbjct 153228 TGGGTACAGGGGGGA 153242 >seq22039 Length=165401 Score = 116 bits (128), Expect = 2e-23 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| |||||||||||||||||||||||||||| |||| ||||||| ||||||||||| Sbjct 79862 GTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGGGGAAACTCTGG 79803 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || ||| || ||| |||||||| | || || | ||| ||||||||||| Sbjct 79802 TGGAGGTCCGTAGCAGTCCTGACGTGCAAACTGGTCATCTGACCTGGCTATAGGGGCGA 79744 Score = 109 bits (120), Expect = 2e-21 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || || | |||||| | | ||||| ||||||| Sbjct 80850 GAGTCCGGTTGCTTGGGAATGCAGCCCAAAGTGTGTGGTAAACTCCATCTAAGGCTAAAT 80791 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| |||||| |||| ||||||| | | ||||| ||||||| |||||| || Sbjct 80790 TCTGGCATGAGACCAATAGTCAACAAGTACTATAAGGGAAAGTTGAAAAGAACTTTGAAA 80731 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| || || |||||| |||| | ||| || || Sbjct 80730 AGAGAGTACAAGAGGGGGTGAAACTGTTAAGAGGTAAACG 80691 >seq31172 Length=4047778 Score = 98.7 bits (108), Expect = 4e-18 Identities = 92/116 (79%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||||| |||||||||||||||||||||| |||||||| |||||| |||||||||| Sbjct 1687699 TTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGTGAAACCAGAGAAAACTCTGGT 1687758 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || || | ||| || ||| | || |||| | || ||| | |||||| |||||| Sbjct 1687759 GG-GGTCCATAGCAGTCCTGACATGTAAATTGGTCCTCAGACCTGGGTACAGGGGC 1687813 >seq28135 Length=2346816 Score = 91.5 bits (100), Expect = 6e-16 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||| ||| | || ||| |||||| | | ||||| ||||||| Sbjct 1553387 GAGTCCGGTTGCTTGGGAATGTAGCCCAAA--GGGTGGTAAACTCCATCTAAGGCTAAAT 1553444 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| Sbjct 1553445 ACCGGCAGGAGACCGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAGG 1553504 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||||||| || || | ||||| ||| | ||| || Sbjct 1553505 TGAGAGTTCAAGAGGGCCTGAAACCGTTAAGAGGTAA 1553541 >seq27888 Length=181681 Score = 86.0 bits (94), Expect = 3e-14 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 157544 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 157603 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||||| | || | ||||| || | ||||| ||||||| ||||| | Sbjct 157604 ACCAGCATGAGACCAAGAGTCAATAAGTATCGTAAGGGAAAGTTGAAAAGAACTTTCAAG 157663 Query 160 AGAGAGTTAAAAAGCACGTG 179 | |||||| || || || || Sbjct 157664 ATAGAGTTGAAGAGGACATG 157683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2076675764800