Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq22533 183 5e-44 seq15056 172 9e-41 seq32167 96.9 6e-18 >seq22533 Length=2432837 Score = 183 bits (202), Expect = 5e-44 Identities = 196/255 (77%), Gaps = 17/255 (7%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | |||| |||| | |||||||||| |||||||||||||||||||| | Sbjct 1006418 GTCAGTGTAGCACACGTGTAGCCCTGCACATCTAAGGACATCACAGACCTGTTATTGC-T 1006476 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCATA 131 || ||| | || || | |||| | |||||||||||||| | ||||| | Sbjct 1006477 CAGTCTTGGGT-GGATGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGATGCCAAC--TG 1006533 Query 132 GTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 | | |||| ||| |||||| | | ||||| |||||||||| |||||||| Sbjct 1006534 CTGG--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCATTCGTTATCGAAATTAACC 1006591 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 |||||||||| || ||||||||||||||||||||||||||||| || |||| |||||| Sbjct 1006592 AGACAAATCATTCTACCAACTAAGAACGGCCATGCACCACCACTTATGGAATGGAGAAAG 1006651 Query 244 AGCTATCAATCTGTC 258 ||||||| ||||||| Sbjct 1006652 AGCTATCGATCTGTC 1006666 >seq15056 Length=3174118 Score = 172 bits (190), Expect = 9e-41 Identities = 195/253 (77%), Gaps = 20/253 (8%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||| || ||| |||| ||||||||||||||||||||||||||||||| ||| Sbjct 254424 CAATGTAGCATGCATGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 254366 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATAGT 133 | || || ||||| |||| | |||||||||||||| | |||| || | | Sbjct 254365 ACCTCGGAT-GGCTGAGCGCCACTTGTCCCTCTAAGAAGTTGGAGGACACCGAC--TGCT 254309 Query 134 CGATGGGGCTATTTAGCAGGTTA-------AG-GTCTCGTTCGTTATCGGAATTAACCAG 185 || |||||| || | |||| || |||||||||| |||| ||||||||||| Sbjct 254308 CG--GGGGCTGCGTAACTAGTTAGCGTGCCAGAGTCTCGTTCGATATCAGAATTAACCAG 254251 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| ||||||||||||||||| ||||| ||||||||||||| ||||| |||| || Sbjct 254250 ACAAATCGCTCCACCAACTAAGAAC-GCCATACACCACCACCCATGGAATCGAGAA--AG 254194 Query 246 CTATCAATCTGTC 258 | ||| ||||||| Sbjct 254193 CAATCGATCTGTC 254181 >seq32167 Length=1788516 Score = 96.9 bits (106), Expect = 6e-18 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| ||| ||||| ||||||||||||| || ||| |||||||||||| ||||||||| Sbjct 986493 TCTCCTTCATTATCCAAATTAACCAGACAGATTGCTCTACCAACTAAGAATGGCCATGCA 986434 Query 220 CCACCACCCATAGAATCAAGAAAGAGCT 247 ||| ||| || ||||| |||||||||| Sbjct 986433 CCATCACTCACAGAATGGAGAAAGAGCT 986406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795603740256