Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq23506 188 2e-45 seq1510 131 5e-28 seq27575 109 2e-21 >seq23506 Length=358650 Score = 188 bits (208), Expect = 2e-45 Identities = 351/501 (70%), Gaps = 57/501 (11%) Strand=Plus/Minus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| ||| || | ||| | ||||||||||||| || ||| ||||||||||| Sbjct 281267 AAAGAGTCCTCTACTGTTGTTTTTCATCACTACCTCCCCTGATCAGGAGTGGGTAATTTG 281208 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 |||| |||||||||||||| |||||||| ||||||||| |||||| || ||||| || Sbjct 281207 TAGGCCTCCTGCCTTCCTTGGAAGTGGTAGCTGTTTCTCAGTCTCCCTTTCTGGAATGGA 281148 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC-CACTATCCTACCATCGAAAGT 204 || | |||||| || | || ||| | || ||||||| || | | |||||| |||||| Sbjct 281147 ACTGTGATTCCCTGTCATCCATTGTCATCACGGTAGGCTCAGTGAC-TACCATAGAAAGT 281089 Query 205 TGATAGGGCAGAAATTTGAATGAACCATCGCCGG--CTCAAG-GCCATGCGATTCGTTAA 261 ||||||| |||| | ||| || ||| | || || || | || | | || Sbjct 281088 TGATAGGACAGACGTGGGAA-GA--CATTGGAGGTTATCTAGAGTCA--CCA------AA 281040 Query 262 G----TTATTATGAATCACCAA-GGAG--CCCCGAAGGGCGTTGGTTTTTTATCTAATAA 314 | | || | || || |||| | || | ||||| |||| ||||||||| Sbjct 281039 GCTCCCTGCCCTGGAGCAAGAAGGGAGTTCACCCCA----GTTGG-TTTTGATCTAATAA 280985 Query 315 ATACAC--------CCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTA 359 || ||| ||| || | | |||| | || || |||| ||||||||| Sbjct 280984 ATGCACGTACACCTCCCCCCCCATGGCGGGCTCAGCTCCCTTCAGTATGTGTTAGCTCTA 280925 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||| |||||| |||||||| |||| ||| | | ||| |||||||||||||| Sbjct 280924 GAACTACCACAGTTATCCAAGTAG-GAGGAGCCAGCAA-------CTAACTGATTTAATG 280873 Query 420 AGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||||||||||||||||||| || || || ||||| ||||||||| ||||||||| Sbjct 280872 AGCCATTCGCAGTTTCACTATACCAGTGGGC----ACTTAAACATGCATGTCTTAATCTT 280817 Query 479 TGAGACAAGCATATGACTACT 499 |||||||||||| || ||||| Sbjct 280816 TGAGACAAGCATGTG-CTACT 280797 >seq1510 Length=1718287 Score = 131 bits (144), Expect = 5e-28 Identities = 104/124 (84%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||| ||||||| ||||| | ||||||||||| Sbjct 452276 ACTCATTCCAATTACAGGGCCTTGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 452335 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| || ||| |||||||||| | |||||||||||||||||||||||||||| |||| Sbjct 452336 CCCAGGTGAGGAGTGGGTAATTTTTGTGCCTGCTGCCTTCCTTGGATGTGGTAGCTGTTT 452395 Query 122 CTCA 125 |||| Sbjct 452396 CTCA 452399 >seq27575 Length=1090835 Score = 109 bits (120), Expect = 2e-21 Identities = 161/224 (72%), Gaps = 17/224 (8%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTG-TCACTACCT 60 |||||||||||||||| | || ||||||| ||| || | ||| || || ||| | ||| Sbjct 593308 ACTCATTCCAATTACAGGGCCTCAAAAGAATCCTTTA-CTGTAATTTTTCATCATTGCCT 593366 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | ||| ||| ||| ||| |||| ||||||||| | | |||||| || Sbjct 593367 CCCAG-GTCAGGAGTGGATAACTTGC-----------CTTCCTTGGGTATAGTAGCCATT 593414 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 | |||||||| ||| |||| | ||| || | ||| ||| || | | ||||||||| Sbjct 593415 TTTCAGGCTCTTTCT--GGAACCAAACACTGAATCCAGGTTGCCTATGGCCACCATGGTA 593472 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 ||| | |||||||||||||||||| ||||||| || ||| Sbjct 593473 GGCACAGAGACTACCATCGAAAGTTGATTGGGCAGATGTTAGAA 593516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508059242496