Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq30635 98.7 8e-16 seq29155 96.9 3e-15 >seq30635 Length=1530594 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 517870 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 517929 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 517930 GTTCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCAGAGA 517976 >seq29155 Length=1778819 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||||||||| |||| ||||| || || |||||||| || | Sbjct 1083460 CATGAAGAGATCTGGAATCCAGAGGGCAAAGAAAAGATCTCGGGCACGTTGCTCTTCCTT 1083401 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| | ||| ||||| ||||||||||||||||| |||||| |||||||||| Sbjct 1083400 TCCTGTGTTCTTTTTT-AAGTCAAGGAACTCAAAGATGTCTAAATGCCAAGGTTCCAGGT 1083342 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 1083341 AAATAGCAAA 1083332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396817085488640