Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq75688 145 3e-32 seq27452 140 1e-30 seq118044 123 1e-25 seq118499 104 1e-19 seq117037 102 3e-19 seq46208 102 3e-19 seq35069 102 3e-19 seq17346 78.8 4e-12 >seq75688 Length=7763 Score = 145 bits (160), Expect = 3e-32 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 3882 TTAGGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGT 3823 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 3822 GGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 3765 >seq27452 Length=344656 Score = 140 bits (154), Expect = 1e-30 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 334992 GGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 334933 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 334932 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 334878 >seq118044 Length=32052 Score = 123 bits (136), Expect = 1e-25 Identities = 95/113 (84%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 12097 GTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 12038 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 |||||| || |||||| ||| | |||||||| || || | ||||||||| Sbjct 12037 TGGAGGTCCGTAGCGGTCCTGACATGCAAATCAGTCATCTCACGTGGGTATAG 11985 >seq118499 Length=19788 Score = 104 bits (114), Expect = 1e-19 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct 10320 TTAGGACCTAAAAGATGGTGAACTATGTCTGGGCAGGGTGAAGCCAGAGAAAACTCTGGT 10379 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 ||||| | |||||| || ||||||||| || || || ||||||||| Sbjct 10380 GGAGGTCCTTAGCGGTCTTGATGTGCAAATCAGTCATCCAACCTGGGTATAG 10431 >seq117037 Length=345226 Score = 102 bits (112), Expect = 3e-19 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||| Sbjct 240848 TTAGGACCCAAAAGATGATGAACTATGCCTGAGCAGGGCGAAGCCAGAGGAAACTCTGGT 240907 Query 626 GGAGGCTCGCAGCGGTTCTG-GCGTGCA 652 ||||| || |||||| ||| |||||| Sbjct 240908 GGAGGTCCGTAGCGGTCCTGAACGTGCA 240935 >seq46208 Length=14779 Score = 102 bits (112), Expect = 3e-19 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||||| |||||||||| ||||||||||| | |||| || |||||||||||||||| Sbjct 201 TTAGGACCTGAAAGATGGTAAACTATGCCTGGACAGGGCAAAATCAGAGGAAACTCTGGT 142 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | ||| || ||| || |||| |||||||||| | ||| || || |||||||| Sbjct 141 GAAGGTCCGTAGCAGTCCTGGTGTGCAAATCGGTAGTCTAACCTGTAAATAGGGGC 86 >seq35069 Length=146101 Score = 102 bits (112), Expect = 3e-19 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||| ||||||||||||||||||| || ||||||||||||||||||||||| |||| | Sbjct 49753 GACCTGAAAGATGGTGAACTATGCTTGGGCAGGGTGAAGCCAGAGGAAACTCTTGTGGGG 49812 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || |||||| ||| | ||||| ||| | || | ||| |||||||| || Sbjct 49813 GTCCGTAGCGGTCCTGACCTGCAAGTCGGTAATCTGACCTGGCTATAGGGGTGA 49866 >seq17346 Length=453640 Score = 78.8 bits (86), Expect = 4e-12 Identities = 82/105 (78%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 |||||||||||||||||| |||| |||||||||||||||||| |||||| | || Sbjct 218943 GATGGTGAACTATGCCTGGGCAGGGC-AAGCCAGAGGAAACTCTGCTGGAGGTCCATAGT 218885 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||| | ||||||| | || || | |||||| ||||| || Sbjct 218884 GGTCCTGCCCTGCAAAT-GGTCATCCGACCTGGGTAAAGGGGGGA 218841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077439449150