Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq87854 152 2e-35 seq34856 143 1e-32 seq36337 82.4 4e-14 >seq87854 Length=50643 Score = 152 bits (168), Expect = 2e-35 Identities = 95/102 (93%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18002 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 17943 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||| ||||| | || || ||| ||||||| || Sbjct 17942 CCGAATCCCCGCCACGCGGCGCGGTGCAGGAAATGTGGCCTA 17901 >seq34856 Length=935204 Score = 143 bits (158), Expect = 1e-32 Identities = 92/99 (93%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 724636 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACG-CAAGTGAACAGGGAAGAGCCCAGCT 724694 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGC 99 |||||| |||||||||||| | ||||||||| ||||||| Sbjct 724695 CCGAATTCCCGCCCCGCGGCGTGGCGCGGGAAATGTGGC 724733 >seq36337 Length=20920 Score = 82.4 bits (90), Expect = 4e-14 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||| |||||||||||||||||||| | ||| || ||||||||||||| | Sbjct 11751 GGAAAAGAAACTGACCAGGATTCCCTCAGTAACAGGGAGCAAATAGGGAAGAGCCCACTG 11692 Query 61 CCGAATCC 68 | |||||| Sbjct 11691 CTGAATCC 11684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230142154320