Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq110809 113 9e-23 seq27499 109 1e-21 >seq110809 Length=2084966 Score = 113 bits (124), Expect = 9e-23 Identities = 182/258 (71%), Gaps = 19/258 (7%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| |||||||||||||||| Sbjct 397724 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 397781 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||| ||||||||| | ||| |||| ||| | ||| | || | | Sbjct 397782 ATGCTCTTAGATGT------CTGCATGCGC------CTGGCTTAGC----GTGTGCCTAC 397825 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || || ||| |||||| | | || | | | ||| ||||||| | | |||| Sbjct 397826 CCTACGCTGGCAGGCGCGGGTAACCAGTTGAACCCCATTTGTGATGGGGATTGGGGATTG 397885 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | || ||||||| || |||||| ||| | ||| ||| || |||||| Sbjct 397886 CAATTATTCCCTATGAATGAGGAATTCCCAGTAAGTGCGGGCCATAAGCTTGCATTGATT 397945 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 397946 AAGTCCCTGCCCTTTGTA 397963 >seq27499 Length=239224 Score = 109 bits (120), Expect = 1e-21 Identities = 167/239 (70%), Gaps = 22/239 (9%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||| |||| | |||||| Sbjct 38040 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCTAGGGCTGCACACACGCTAC 38098 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTG----------------G 209 |||||| | || || || | | ||| | | |||| || | Sbjct 38099 ACTGACTGCCTCAGCGTGTGCCTACCCTACAACAGCAGGTGTGTGCCTACCCTGGTGCCG 38158 Query 210 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG 269 |||| || | || | | ||||| ||| ||| | | |||||||||||| | | | ||| Sbjct 38159 GTAACCTGTTGAACCCCATTCGTGATGGAGATCG-GGATTGCAATTATTCCCCATAAACT 38217 Query 270 AGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| |||||| ||||||||| ||| || ||||||| ||||||||| |||||| Sbjct 38218 GGGAA----CAGTAAGTGCGTGTCATAAGCTTGCATTGATTAAGTCCCTGCCTTTTGTA 38272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946069298944