Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq75688 428 1e-117 seq55417 320 5e-85 seq65382 141 3e-31 seq85518 134 5e-29 seq88683 131 5e-28 seq88644 98.7 3e-18 seq87247 89.7 2e-15 seq66311 86.0 2e-14 seq27450 80.6 9e-13 seq47450 75.2 4e-11 >seq75688 Length=7763 Score = 428 bits (474), Expect = 1e-117 Identities = 273/297 (92%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 1680 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACTGTGCCAGACTAGAGTCAAGCTCAA 1739 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | Sbjct 1740 CAGGGTCTTCTTTCCCTGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCCCTGG 1799 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||| ||| ||||| | ||||| ||||||||||||||| Sbjct 1800 ATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCACTTATGCGAGTCACTAATTAGATG 1859 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 1860 GCGAGACATTTGGCTTCCTTAAGAGAGTCATAGTTACTCCCGCCNTTTACCCGCGCTTCA 1919 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1920 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 1976 Score = 113 bits (124), Expect = 1e-22 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 1431 CTTCTGCTCCATGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 1490 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 1491 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 1537 >seq55417 Length=96570 Score = 320 bits (354), Expect = 5e-85 Identities = 236/276 (86%), Gaps = 12/276 (4%) Strand=Plus/Plus Query 190 AGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----CTCCCACTT 245 ||| |||||||||| || || |||||||||||| | | | ||| ||||||||| Sbjct 39577 AGTGAAAAAACGATGAGAGTGGTGGTATTTCACCGGAGGCCCGCCGGGGGCCTCCCACTT 39636 Query 246 ATTCTACACCTCTCAAGTCA--------TTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 | ||||||||||||| ||| |||||| | | ||||||||||||||||||| Sbjct 39637 ACTCTACACCTCTCATGTCTCTTCACCGTTTCACCATGCNAGACTAGAGTCAAGCTCAAC 39696 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| || Sbjct 39697 AGGGTCTTCTTTCCCCGCTGATTCCACCAAGCCCATCCCCTTGGCTGTGGTTTCGCTGGA 39756 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 39757 TAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATAA 39816 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453 ||||||||||||||||||||||||||||||||||| Sbjct 39817 TGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 39852 >seq65382 Length=6214 Score = 141 bits (156), Expect = 3e-31 Identities = 101/116 (87%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 ||||||||| | |||||| ||||||||||||||||||| ||| ||||||| | | ||||| Sbjct 3812 TAATTAGATTATGAGGCAATTGGCTACCTTAAGAGAGTTATACTTACTCCTGACTTTTAC 3753 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 || | ||| ||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 3752 CCACACTTCATTGAATTTCTTCACTTTGACATTCAGACTACTGAGCAGAAATCACA 3697 >seq85518 Length=3845 Score = 134 bits (148), Expect = 5e-29 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 ||||||||||| |||||||||||||||||||| ||||| | | ||||||| | | ||||| Sbjct 3342 TAATTAGATGATGAGGCATTTGGCTACCTTAATAGAGTTACACTTACTCCTGACTTTTAC 3401 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 || | ||| ||||||||||| ||||||||||||||| ||| ||||||||||||| Sbjct 3402 CCACACTTCATTGAATTTCTTTACTTTGACATTCAGACTACTAAGCAGAAATCACAT 3458 >seq88683 Length=19791 Score = 131 bits (144), Expect = 5e-28 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 ||||||||| | |||||| ||||||||||||| ||||| ||| ||||||| | ||||| Sbjct 8616 TAATTAGATCATGAGGCAATTGGCTACCTTAAAAGAGTTATACTTACTCCTGATTTTTAC 8557 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 || ||| ||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 8556 CCATACTTCATTGAATTTCTTCACTTTGACATTCAGACTACTGAGCAGAAATCACAT 8500 >seq88644 Length=20596 Score = 98.7 bits (108), Expect = 3e-18 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 ||||||||| || | || |||||||||||| ||||| | ||||||||| ||| |||| Sbjct 8751 TCTTTTGCT--ACGGAAGGTTTCTGTTCTCCCTGAGTTCATCTTAGGACATCTGTGTTAC 8808 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||||||| || || ||| ||||||||||||||| || |||| Sbjct 8809 TATTTGACAGATGTACCACCTCAGTCAAACTCCCCACCTGGCACTGTC 8856 >seq87247 Length=276322 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| |||| ||||||||||| ||| ||| Sbjct 262460 CTTCTGCTCCATGGGAGGTTTCTGTCCTCCCTGAGCTTACCTTAGGACACTTGCATTACT 262519 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| || |||||| |||||||||||||| || |||| Sbjct 262520 GTTTGACAGTTGTACCACCCCAGTTAAACTCCCCACCTGGCACTGTC 262566 >seq66311 Length=464057 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||| ||||||| |||| ||| | |||||||||||||| |||| Sbjct 137502 CTTCTGCTCCTTGGGAGGTTTCTGTCCTCCCTGATCTCACCTTAGGACACCTGTGTTACC 137561 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| ||| ||| || |||||| ||||||||||||||| || |||| Sbjct 137562 ATTTGACAAGTGTACCACCCCAGTCAAACTCCCCACCTGGCACTGTC 137608 >seq27450 Length=349427 Score = 80.6 bits (88), Expect = 9e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 11 TGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTT 70 ||||| |||| || |||||||||||| |||| ||||||||||||||| ||| |||| Sbjct 178479 TGCTCCACAG-AGGTTTCTGTTCTCC-TGAGCTTGCCTTAGGACACCTGCATTACTGTTT 178536 Query 71 AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 |||| ||| | || || ||||||||||||||| || Sbjct 178537 GACAGGTGTACTACCTCAATCAAACTCCCCACCTGGCA 178574 >seq47450 Length=1995502 Score = 75.2 bits (82), Expect = 4e-11 Identities = 82/108 (76%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 |||||||| || |||| |||||| ||| |||| | |||||||||||||||||| Sbjct 692728 TCTTTTGCC--ACGGGAGGGTTCTGTCTTCCTTGAGCTCGTCTTAGGACACCTGCGTTAC 692785 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| || | | | ||||||||||||||| || |||| Sbjct 692786 CATTTGACAGGTGTACCCCTCTAATCAAACTCCCCACCTGGCACTGTC 692833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633248012704